miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 142966 0.66 0.984968
Target:  5'- gGGAAACGCCCuggagaccgCCUCcgcaaacuccGGGCGccUGGUCUc -3'
miRNA:   3'- gUCUUUGUGGG---------GGAG----------UUCGU--ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 142667 0.67 0.97887
Target:  5'- -uGAAGCACCUCUUUAugagaaagugcAGCugcaGGUCCa -3'
miRNA:   3'- guCUUUGUGGGGGAGU-----------UCGua--CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 142134 0.7 0.908204
Target:  5'- -uGGAGCACUCCUUCcAGCcgGGgagCCc -3'
miRNA:   3'- guCUUUGUGGGGGAGuUCGuaCCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 138742 0.68 0.96491
Target:  5'- cCAGcAugGCCCCUgucugCcAGCAUGGcCCc -3'
miRNA:   3'- -GUCuUugUGGGGGa----GuUCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 138705 0.69 0.925652
Target:  5'- cCAGcAugGCCCCuguCUCcAGCAUGGcCCc -3'
miRNA:   3'- -GUCuUugUGGGG---GAGuUCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 138667 0.68 0.96491
Target:  5'- cCAGcAugGCCCCUgucugCcAGCAUGGcCCc -3'
miRNA:   3'- -GUCuUugUGGGGGa----GuUCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 137017 0.72 0.826449
Target:  5'- gAGAGGCACCUCC-CAAacugggaguGCA-GGUCCa -3'
miRNA:   3'- gUCUUUGUGGGGGaGUU---------CGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 136359 0.68 0.96491
Target:  5'- gGGggGCGCCUUCagGcGCAUGG-CCa -3'
miRNA:   3'- gUCuuUGUGGGGGagUuCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 135978 0.67 0.976478
Target:  5'- uCAGAGcaugGCGgCCUC-CAGGUacGUGGUCCu -3'
miRNA:   3'- -GUCUU----UGUgGGGGaGUUCG--UACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 134957 0.73 0.762498
Target:  5'- aGGggGCGCCgCCUCcacAGCAgcaucuggggGGUCCg -3'
miRNA:   3'- gUCuuUGUGGgGGAGu--UCGUa---------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 134353 0.67 0.971108
Target:  5'- gCGGu--CGCCCCCUUggucuGGUcgGGUCUc -3'
miRNA:   3'- -GUCuuuGUGGGGGAGu----UCGuaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 134126 0.7 0.895359
Target:  5'- gGGggGCGCCCCCagcuguacUCuGGGCGccgcGGUCCc -3'
miRNA:   3'- gUCuuUGUGGGGG--------AG-UUCGUa---CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 133929 0.69 0.936059
Target:  5'- uGGggGCGCCCCC-CAgaccccGGCAggcGG-CCg -3'
miRNA:   3'- gUCuuUGUGGGGGaGU------UCGUa--CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 133207 0.67 0.973893
Target:  5'- -uGAGcccGCGCCCCCUCccAGCGU-GUCUc -3'
miRNA:   3'- guCUU---UGUGGGGGAGu-UCGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 132938 0.68 0.957835
Target:  5'- -cGAGGguCCCCCcgcggcgCGAGCccuccgGUGGUCCg -3'
miRNA:   3'- guCUUUguGGGGGa------GUUCG------UACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 132725 0.76 0.620417
Target:  5'- cCAGGuAAgACCCCUUCAGGUAguuguuugGGUCCa -3'
miRNA:   3'- -GUCU-UUgUGGGGGAGUUCGUa-------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 131990 0.72 0.843216
Target:  5'- gGGAGGCAgCgCCUUCAAGU--GGUCCa -3'
miRNA:   3'- gUCUUUGUgG-GGGAGUUCGuaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 131188 0.68 0.961485
Target:  5'- aCAGggGCGCCgCCUCGaagacgGGCcucuggGaGUCCa -3'
miRNA:   3'- -GUCuuUGUGGgGGAGU------UCGua----C-CAGG- -5'
3650 3' -52.5 NC_001650.1 + 130990 0.72 0.826449
Target:  5'- aGGcgGCGCCCCUgucgCGGGCccucuauUGGUCCa -3'
miRNA:   3'- gUCuuUGUGGGGGa---GUUCGu------ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 130882 0.74 0.713074
Target:  5'- aCAaGAGCGCCCCCgagacccaCGAGCG-GGUCCu -3'
miRNA:   3'- -GUcUUUGUGGGGGa-------GUUCGUaCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.