miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 129386 0.68 0.968116
Target:  5'- aCGGAGGC-CCCCaUCAacAGCAUGGa-- -3'
miRNA:   3'- -GUCUUUGuGGGGgAGU--UCGUACCagg -5'
3650 3' -52.5 NC_001650.1 + 128473 0.77 0.589387
Target:  5'- uGGGcccCACCCCCUCGGGCAcgGGcCCg -3'
miRNA:   3'- gUCUuu-GUGGGGGAGUUCGUa-CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 125221 0.66 0.989622
Target:  5'- cCGGG---ACCCCCUCuggcgaucgaGAGCcucucgcagAUGGUCCu -3'
miRNA:   3'- -GUCUuugUGGGGGAG----------UUCG---------UACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 124172 0.66 0.983107
Target:  5'- aCAGGAACGCCCCCguguacucCAccccCGUGGgccCCa -3'
miRNA:   3'- -GUCUUUGUGGGGGa-------GUuc--GUACCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 122905 0.68 0.961485
Target:  5'- gGGAGGCcaccucccuguACCgCCUCAGGCAgcccaggagGGUCUc -3'
miRNA:   3'- gUCUUUG-----------UGGgGGAGUUCGUa--------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 122282 0.68 0.961485
Target:  5'- aCAGGucccugcACGCCCCCgcggcgcgCGAGCAgcUGG-CCg -3'
miRNA:   3'- -GUCUu------UGUGGGGGa-------GUUCGU--ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 122183 0.68 0.961485
Target:  5'- -uGAccCGCCCCCgc-AGCAUGGccUCCa -3'
miRNA:   3'- guCUuuGUGGGGGaguUCGUACC--AGG- -5'
3650 3' -52.5 NC_001650.1 + 121598 0.66 0.986668
Target:  5'- aGGcgGCGCCCCCggccgGGGCgAUGG-CCa -3'
miRNA:   3'- gUCuuUGUGGGGGag---UUCG-UACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 120503 0.67 0.971108
Target:  5'- gAGGGugGCCUCCUUcgggGAGCA-GGUgCCu -3'
miRNA:   3'- gUCUUugUGGGGGAG----UUCGUaCCA-GG- -5'
3650 3' -52.5 NC_001650.1 + 120145 0.76 0.630788
Target:  5'- gCGGggGCACCagCCUC-AGCA-GGUCCc -3'
miRNA:   3'- -GUCuuUGUGGg-GGAGuUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 118904 0.67 0.981077
Target:  5'- aCAGGAaccuguGCACCCCCUUcuccAGCuu-GUCCc -3'
miRNA:   3'- -GUCUU------UGUGGGGGAGu---UCGuacCAGG- -5'
3650 3' -52.5 NC_001650.1 + 117476 0.68 0.957835
Target:  5'- -cGGAGCGCCCCCcaccgUCAccAGC-UGGUUa -3'
miRNA:   3'- guCUUUGUGGGGG-----AGU--UCGuACCAGg -5'
3650 3' -52.5 NC_001650.1 + 115395 0.67 0.971108
Target:  5'- cCAGGAuC-CCCCCgucgCAGGCcGUGG-CCa -3'
miRNA:   3'- -GUCUUuGuGGGGGa---GUUCG-UACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 114260 0.69 0.925652
Target:  5'- aGGAGGcCGCCCCC---AGCAUcccGGUCCc -3'
miRNA:   3'- gUCUUU-GUGGGGGaguUCGUA---CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 112191 0.66 0.984968
Target:  5'- aGGggGCugcccaccuuaACCuCCCUCAggAGCAUGcccgcGUCCu -3'
miRNA:   3'- gUCuuUG-----------UGG-GGGAGU--UCGUAC-----CAGG- -5'
3650 3' -52.5 NC_001650.1 + 111135 0.66 0.986668
Target:  5'- aGGGGACgcgcaaccccggGCCCUCUCAgggagggugugaGGCG-GGUCCc -3'
miRNA:   3'- gUCUUUG------------UGGGGGAGU------------UCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 110654 0.71 0.869884
Target:  5'- gGGGAcccguccccgcgcacGCGCCCCCUCGGGCGaugccGGaCCg -3'
miRNA:   3'- gUCUU---------------UGUGGGGGAGUUCGUa----CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 110499 0.67 0.976478
Target:  5'- aAGAGGCcggACCCCC-CGAGCAauGUCa -3'
miRNA:   3'- gUCUUUG---UGGGGGaGUUCGUacCAGg -5'
3650 3' -52.5 NC_001650.1 + 109280 0.69 0.945488
Target:  5'- gGGggGCGCCCCgCUCGucGCccUGG-CCa -3'
miRNA:   3'- gUCuuUGUGGGG-GAGUu-CGu-ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 107226 0.73 0.790804
Target:  5'- gAGAAGCuggccGCCgCCCUCAAGauggacgGGUCCa -3'
miRNA:   3'- gUCUUUG-----UGG-GGGAGUUCgua----CCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.