Results 81 - 100 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3650 | 3' | -52.5 | NC_001650.1 | + | 69028 | 0.72 | 0.851309 |
Target: 5'- -cGAGGCGCcccgCCCCUCGAGCGaGGgccCCg -3' miRNA: 3'- guCUUUGUG----GGGGAGUUCGUaCCa--GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 68848 | 0.66 | 0.989622 |
Target: 5'- cCGGuGAGCAgCCUCUCGGuGCAcgGGUUCg -3' miRNA: 3'- -GUC-UUUGUgGGGGAGUU-CGUa-CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 68709 | 0.69 | 0.940895 |
Target: 5'- aAG-AGCGCCCCCUCGcggagacccagcGGCAcgucauggUGGcCCg -3' miRNA: 3'- gUCuUUGUGGGGGAGU------------UCGU--------ACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 66311 | 0.67 | 0.973893 |
Target: 5'- aAGGGACGCCCCCaaagaUCA-GCucGGUCa -3' miRNA: 3'- gUCUUUGUGGGGG-----AGUuCGuaCCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 62297 | 0.72 | 0.843216 |
Target: 5'- gAGAAaccgGCACCgCCCUCAGcCAUGG-CCu -3' miRNA: 3'- gUCUU----UGUGG-GGGAGUUcGUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 61718 | 0.66 | 0.986668 |
Target: 5'- aAGGuacACGCCCCCgaugCAGGCGgccaggaaaagaUGG-CCg -3' miRNA: 3'- gUCUu--UGUGGGGGa---GUUCGU------------ACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 61389 | 0.66 | 0.984789 |
Target: 5'- uCAGggGCACCCUCUCucuugGGGCAacagcgauagucaUGGg-- -3' miRNA: 3'- -GUCuuUGUGGGGGAG-----UUCGU-------------ACCagg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 60962 | 0.66 | 0.983107 |
Target: 5'- gGGGAACACgCgCCUCu-GCAUGGcgCUg -3' miRNA: 3'- gUCUUUGUGgG-GGAGuuCGUACCa-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 60841 | 0.7 | 0.895359 |
Target: 5'- uGGAGACGguggcCCCCCUCAaccGGCAgGGcgCCu -3' miRNA: 3'- gUCUUUGU-----GGGGGAGU---UCGUaCCa-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 58748 | 0.68 | 0.94984 |
Target: 5'- gGGcGACACCCCCaUCuuccAGCAcgUGGcCCu -3' miRNA: 3'- gUCuUUGUGGGGG-AGu---UCGU--ACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 55090 | 0.67 | 0.981077 |
Target: 5'- uCAGAAucccACGCCCCCUaaaAAGCcaGGUaCUa -3' miRNA: 3'- -GUCUU----UGUGGGGGAg--UUCGuaCCA-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 55040 | 0.7 | 0.914264 |
Target: 5'- gCAGAAcccagUACCCgCgCGAGCcgGGUCCa -3' miRNA: 3'- -GUCUUu----GUGGGgGaGUUCGuaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 50637 | 0.72 | 0.826449 |
Target: 5'- -uGAuGCGCCCCCUCGAGgGgccGGUgCCc -3' miRNA: 3'- guCUuUGUGGGGGAGUUCgUa--CCA-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 50457 | 0.86 | 0.205417 |
Target: 5'- gAGAGGCGCCCCUgUCGcGCAUGGUCCc -3' miRNA: 3'- gUCUUUGUGGGGG-AGUuCGUACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 50235 | 0.7 | 0.920081 |
Target: 5'- ------aGCCCCCUCAGGCccGGgCCu -3' miRNA: 3'- gucuuugUGGGGGAGUUCGuaCCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 49862 | 0.66 | 0.988217 |
Target: 5'- gAGggGCAaggcccaCCCC-CAGGCcUGGUUg -3' miRNA: 3'- gUCuuUGUg------GGGGaGUUCGuACCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 48059 | 1.11 | 0.005241 |
Target: 5'- cCAGAAACACCCCCUCAAGCAUGGUCCc -3' miRNA: 3'- -GUCUUUGUGGGGGAGUUCGUACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 47805 | 0.68 | 0.961485 |
Target: 5'- uUAGGAACugCaCCCUgCGGGCAgacagGG-CCg -3' miRNA: 3'- -GUCUUUGugG-GGGA-GUUCGUa----CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 47520 | 0.68 | 0.968116 |
Target: 5'- gGGGGAC-CCCCCU-GAGCuaucccugGGUCUa -3' miRNA: 3'- gUCUUUGuGGGGGAgUUCGua------CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 46489 | 0.68 | 0.961485 |
Target: 5'- uCAGAAGuuCACCCUCUCcccGGCGUcGGggCCg -3' miRNA: 3'- -GUCUUU--GUGGGGGAGu--UCGUA-CCa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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