miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 138705 0.69 0.925652
Target:  5'- cCAGcAugGCCCCuguCUCcAGCAUGGcCCc -3'
miRNA:   3'- -GUCuUugUGGGG---GAGuUCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 83319 0.71 0.888582
Target:  5'- cCAGGAugACCCagUCGAGgGaGGUCCu -3'
miRNA:   3'- -GUCUUugUGGGggAGUUCgUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 158630 0.7 0.895359
Target:  5'- uCAGGGACcuguccCCCCCUCccuccAGGCGgcuacgggGGUCCa -3'
miRNA:   3'- -GUCUUUGu-----GGGGGAG-----UUCGUa-------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 102195 0.7 0.895359
Target:  5'- cCAGAGACACCCCCaggcgcacucCAGGCAguucuuucaGGgagCCg -3'
miRNA:   3'- -GUCUUUGUGGGGGa---------GUUCGUa--------CCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 142134 0.7 0.908204
Target:  5'- -uGGAGCACUCCUUCcAGCcgGGgagCCc -3'
miRNA:   3'- guCUUUGUGGGGGAGuUCGuaCCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 180626 0.7 0.914264
Target:  5'- gAGAGGCGCCCCCUgGAcccCcgGGaCCa -3'
miRNA:   3'- gUCUUUGUGGGGGAgUUc--GuaCCaGG- -5'
3650 3' -52.5 NC_001650.1 + 114260 0.69 0.925652
Target:  5'- aGGAGGcCGCCCCC---AGCAUcccGGUCCc -3'
miRNA:   3'- gUCUUU-GUGGGGGaguUCGUA---CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 79581 0.69 0.925652
Target:  5'- cCAGAGGCugCCCgUCu-GCGUGGa-- -3'
miRNA:   3'- -GUCUUUGugGGGgAGuuCGUACCagg -5'
3650 3' -52.5 NC_001650.1 + 97833 0.69 0.925652
Target:  5'- cCAGAAGCAUCgCCCUCGc-CcgGGUCa -3'
miRNA:   3'- -GUCUUUGUGG-GGGAGUucGuaCCAGg -5'
3650 3' -52.5 NC_001650.1 + 173454 0.71 0.874334
Target:  5'- gCAGuGAGCACCCCCUagucugccuGGCAacccaGGUCCc -3'
miRNA:   3'- -GUC-UUUGUGGGGGAgu-------UCGUa----CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 6747 0.71 0.874334
Target:  5'- gCAGuGAGCACCCCCUagucugccuGGCAacccaGGUCCc -3'
miRNA:   3'- -GUC-UUUGUGGGGGAgu-------UCGUa----CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 110654 0.71 0.869884
Target:  5'- gGGGAcccguccccgcgcacGCGCCCCCUCGGGCGaugccGGaCCg -3'
miRNA:   3'- gUCUU---------------UGUGGGGGAGUUCGUa----CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 120145 0.76 0.630788
Target:  5'- gCGGggGCACCagCCUC-AGCA-GGUCCc -3'
miRNA:   3'- -GUCuuUGUGGg-GGAGuUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 130882 0.74 0.713074
Target:  5'- aCAaGAGCGCCCCCgagacccaCGAGCG-GGUCCu -3'
miRNA:   3'- -GUcUUUGUGGGGGa-------GUUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 24748 0.72 0.826449
Target:  5'- cCAGGAaggACACCUUCUCccuGGGCGUGGgcUCCa -3'
miRNA:   3'- -GUCUU---UGUGGGGGAG---UUCGUACC--AGG- -5'
3650 3' -52.5 NC_001650.1 + 26808 0.72 0.826449
Target:  5'- gGGAGccgcGCGCCCCUUCGAGU-UGG-CCg -3'
miRNA:   3'- gUCUU----UGUGGGGGAGUUCGuACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 130990 0.72 0.826449
Target:  5'- aGGcgGCGCCCCUgucgCGGGCccucuauUGGUCCa -3'
miRNA:   3'- gUCuuUGUGGGGGa---GUUCGu------ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 137017 0.72 0.826449
Target:  5'- gAGAGGCACCUCC-CAAacugggaguGCA-GGUCCa -3'
miRNA:   3'- gUCUUUGUGGGGGaGUU---------CGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 50637 0.72 0.826449
Target:  5'- -uGAuGCGCCCCCUCGAGgGgccGGUgCCc -3'
miRNA:   3'- guCUuUGUGGGGGAGUUCgUa--CCA-GG- -5'
3650 3' -52.5 NC_001650.1 + 83545 0.72 0.843216
Target:  5'- -cGggGCGCCCCguUUCAGGC-UGGcCCu -3'
miRNA:   3'- guCuuUGUGGGG--GAGUUCGuACCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.