miRNA display CGI


Results 41 - 60 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 130990 0.72 0.826449
Target:  5'- aGGcgGCGCCCCUgucgCGGGCccucuauUGGUCCa -3'
miRNA:   3'- gUCuuUGUGGGGGa---GUUCGu------ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 26808 0.72 0.826449
Target:  5'- gGGAGccgcGCGCCCCUUCGAGU-UGG-CCg -3'
miRNA:   3'- gUCUU----UGUGGGGGAGUUCGuACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 24748 0.72 0.826449
Target:  5'- cCAGGAaggACACCUUCUCccuGGGCGUGGgcUCCa -3'
miRNA:   3'- -GUCUU---UGUGGGGGAG---UUCGUACC--AGG- -5'
3650 3' -52.5 NC_001650.1 + 130882 0.74 0.713074
Target:  5'- aCAaGAGCGCCCCCgagacccaCGAGCG-GGUCCu -3'
miRNA:   3'- -GUcUUUGUGGGGGa-------GUUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 120145 0.76 0.630788
Target:  5'- gCGGggGCACCagCCUC-AGCA-GGUCCc -3'
miRNA:   3'- -GUCuuUGUGGg-GGAGuUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 102195 0.7 0.895359
Target:  5'- cCAGAGACACCCCCaggcgcacucCAGGCAguucuuucaGGgagCCg -3'
miRNA:   3'- -GUCUUUGUGGGGGa---------GUUCGUa--------CCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 142134 0.7 0.908204
Target:  5'- -uGGAGCACUCCUUCcAGCcgGGgagCCc -3'
miRNA:   3'- guCUUUGUGGGGGAGuUCGuaCCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 117476 0.68 0.957835
Target:  5'- -cGGAGCGCCCCCcaccgUCAccAGC-UGGUUa -3'
miRNA:   3'- guCUUUGUGGGGG-----AGU--UCGuACCAGg -5'
3650 3' -52.5 NC_001650.1 + 73586 0.68 0.957835
Target:  5'- cCAGggGCAgggCCUCGuGCGUGGUCUc -3'
miRNA:   3'- -GUCuuUGUgggGGAGUuCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 132938 0.68 0.957835
Target:  5'- -cGAGGguCCCCCcgcggcgCGAGCccuccgGUGGUCCg -3'
miRNA:   3'- guCUUUguGGGGGa------GUUCG------UACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 73746 0.68 0.953954
Target:  5'- ---cAACGCCUCCUaCAAGCAgaugaUGGcUCCg -3'
miRNA:   3'- gucuUUGUGGGGGA-GUUCGU-----ACC-AGG- -5'
3650 3' -52.5 NC_001650.1 + 109280 0.69 0.945488
Target:  5'- gGGggGCGCCCCgCUCGucGCccUGG-CCa -3'
miRNA:   3'- gUCuuUGUGGGG-GAGUu-CGu-ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 68709 0.69 0.940895
Target:  5'- aAG-AGCGCCCCCUCGcggagacccagcGGCAcgucauggUGGcCCg -3'
miRNA:   3'- gUCuUUGUGGGGGAGU------------UCGU--------ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 133929 0.69 0.936059
Target:  5'- uGGggGCGCCCCC-CAgaccccGGCAggcGG-CCg -3'
miRNA:   3'- gUCuuUGUGGGGGaGU------UCGUa--CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 44023 0.69 0.930457
Target:  5'- -cGGAGCugCCCCUUGggauuccAGCAUGGcaagaUCCc -3'
miRNA:   3'- guCUUUGugGGGGAGU-------UCGUACC-----AGG- -5'
3650 3' -52.5 NC_001650.1 + 138705 0.69 0.925652
Target:  5'- cCAGcAugGCCCCuguCUCcAGCAUGGcCCc -3'
miRNA:   3'- -GUCuUugUGGGG---GAGuUCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 97833 0.69 0.925652
Target:  5'- cCAGAAGCAUCgCCCUCGc-CcgGGUCa -3'
miRNA:   3'- -GUCUUUGUGG-GGGAGUucGuaCCAGg -5'
3650 3' -52.5 NC_001650.1 + 79581 0.69 0.925652
Target:  5'- cCAGAGGCugCCCgUCu-GCGUGGa-- -3'
miRNA:   3'- -GUCUUUGugGGGgAGuuCGUACCagg -5'
3650 3' -52.5 NC_001650.1 + 114260 0.69 0.925652
Target:  5'- aGGAGGcCGCCCCC---AGCAUcccGGUCCc -3'
miRNA:   3'- gUCUUU-GUGGGGGaguUCGUA---CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 180626 0.7 0.914264
Target:  5'- gAGAGGCGCCCCCUgGAcccCcgGGaCCa -3'
miRNA:   3'- gUCUUUGUGGGGGAgUUc--GuaCCaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.