Results 101 - 120 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3650 | 3' | -52.5 | NC_001650.1 | + | 23040 | 0.75 | 0.668075 |
Target: 5'- uCAGAGAcCGCCUCCUCGGGCAggaggcugguguaGGUCUu -3' miRNA: 3'- -GUCUUU-GUGGGGGAGUUCGUa------------CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 31499 | 0.76 | 0.620417 |
Target: 5'- -uGAAGCGCCCCCgUCGGGCuugaggGGcUCCg -3' miRNA: 3'- guCUUUGUGGGGG-AGUUCGua----CC-AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 132725 | 0.76 | 0.620417 |
Target: 5'- cCAGGuAAgACCCCUUCAGGUAguuguuugGGUCCa -3' miRNA: 3'- -GUCU-UUgUGGGGGAGUUCGUa-------CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 128473 | 0.77 | 0.589387 |
Target: 5'- uGGGcccCACCCCCUCGGGCAcgGGcCCg -3' miRNA: 3'- gUCUuu-GUGGGGGAGUUCGUa-CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 50457 | 0.86 | 0.205417 |
Target: 5'- gAGAGGCGCCCCUgUCGcGCAUGGUCCc -3' miRNA: 3'- gUCUUUGUGGGGG-AGUuCGUACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 69028 | 0.72 | 0.851309 |
Target: 5'- -cGAGGCGCcccgCCCCUCGAGCGaGGgccCCg -3' miRNA: 3'- guCUUUGUG----GGGGAGUUCGUaCCa--GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 37409 | 0.72 | 0.851309 |
Target: 5'- uCGGggGuCACCCCCUCuauguAGCGcuUGGaguucUCCa -3' miRNA: 3'- -GUCuuU-GUGGGGGAGu----UCGU--ACC-----AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 94680 | 0.71 | 0.859196 |
Target: 5'- gAGGAGCGCCgCCUCG-GUcUGGUCg -3' miRNA: 3'- gUCUUUGUGGgGGAGUuCGuACCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 81513 | 0.69 | 0.936059 |
Target: 5'- gGGAGGCGCUCCagacguUCAAGCAaaaGUCCa -3' miRNA: 3'- gUCUUUGUGGGGg-----AGUUCGUac-CAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 26950 | 0.69 | 0.936059 |
Target: 5'- uGGAGGCggcgcacaGCCCCUcCAGGCcgGGcCCg -3' miRNA: 3'- gUCUUUG--------UGGGGGaGUUCGuaCCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 5001 | 0.69 | 0.925652 |
Target: 5'- cCGGAGGCcuaCCCCUCGAGCcccGG-CCu -3' miRNA: 3'- -GUCUUUGug-GGGGAGUUCGua-CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 6147 | 0.69 | 0.925652 |
Target: 5'- gGGGGACugCCCaCUCAAcccCAUGG-CCa -3' miRNA: 3'- gUCUUUGugGGG-GAGUUc--GUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 171708 | 0.69 | 0.925652 |
Target: 5'- cCGGAGGCcuaCCCCUCGAGCcccGG-CCu -3' miRNA: 3'- -GUCUUUGug-GGGGAGUUCGua-CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 172854 | 0.69 | 0.925652 |
Target: 5'- gGGGGACugCCCaCUCAAcccCAUGG-CCa -3' miRNA: 3'- gUCUUUGugGGG-GAGUUc--GUACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 31293 | 0.69 | 0.925106 |
Target: 5'- uGGAGuugaacACGCCCCCgcaaaacagggacUCGAGCGgggagGGUCUg -3' miRNA: 3'- gUCUU------UGUGGGGG-------------AGUUCGUa----CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 50235 | 0.7 | 0.920081 |
Target: 5'- ------aGCCCCCUCAGGCccGGgCCu -3' miRNA: 3'- gucuuugUGGGGGAGUUCGuaCCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 55040 | 0.7 | 0.914264 |
Target: 5'- gCAGAAcccagUACCCgCgCGAGCcgGGUCCa -3' miRNA: 3'- -GUCUUu----GUGGGgGaGUUCGuaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 89204 | 0.7 | 0.908204 |
Target: 5'- gGGAAGCGCgaCCCCUCGcGGCA-GG-CCg -3' miRNA: 3'- gUCUUUGUG--GGGGAGU-UCGUaCCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 134126 | 0.7 | 0.895359 |
Target: 5'- gGGggGCGCCCCCagcuguacUCuGGGCGccgcGGUCCc -3' miRNA: 3'- gUCuuUGUGGGGG--------AG-UUCGUa---CCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 60841 | 0.7 | 0.895359 |
Target: 5'- uGGAGACGguggcCCCCCUCAaccGGCAgGGcgCCu -3' miRNA: 3'- gUCUUUGU-----GGGGGAGU---UCGUaCCa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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