miRNA display CGI


Results 1 - 20 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 48059 1.11 0.005241
Target:  5'- cCAGAAACACCCCCUCAAGCAUGGUCCc -3'
miRNA:   3'- -GUCUUUGUGGGGGAGUUCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 134126 0.7 0.895359
Target:  5'- gGGggGCGCCCCCagcuguacUCuGGGCGccgcGGUCCc -3'
miRNA:   3'- gUCuuUGUGGGGG--------AG-UUCGUa---CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 55040 0.7 0.914264
Target:  5'- gCAGAAcccagUACCCgCgCGAGCcgGGUCCa -3'
miRNA:   3'- -GUCUUu----GUGGGgGaGUUCGuaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 68848 0.66 0.989622
Target:  5'- cCGGuGAGCAgCCUCUCGGuGCAcgGGUUCg -3'
miRNA:   3'- -GUC-UUUGUgGGGGAGUU-CGUa-CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 31499 0.76 0.620417
Target:  5'- -uGAAGCGCCCCCgUCGGGCuugaggGGcUCCg -3'
miRNA:   3'- guCUUUGUGGGGG-AGUUCGua----CC-AGG- -5'
3650 3' -52.5 NC_001650.1 + 23040 0.75 0.668075
Target:  5'- uCAGAGAcCGCCUCCUCGGGCAggaggcugguguaGGUCUu -3'
miRNA:   3'- -GUCUUU-GUGGGGGAGUUCGUa------------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 23986 0.73 0.762498
Target:  5'- aGGAcuugaugucAGCGcCCCCCUCGGGCG-GGUCUc -3'
miRNA:   3'- gUCU---------UUGU-GGGGGAGUUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 107226 0.73 0.790804
Target:  5'- gAGAAGCuggccGCCgCCCUCAAGauggacgGGUCCa -3'
miRNA:   3'- gUCUUUG-----UGG-GGGAGUUCgua----CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 131990 0.72 0.843216
Target:  5'- gGGAGGCAgCgCCUUCAAGU--GGUCCa -3'
miRNA:   3'- gUCUUUGUgG-GGGAGUUCGuaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 60841 0.7 0.895359
Target:  5'- uGGAGACGguggcCCCCCUCAaccGGCAgGGcgCCu -3'
miRNA:   3'- gUCUUUGU-----GGGGGAGU---UCGUaCCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 69028 0.72 0.851309
Target:  5'- -cGAGGCGCcccgCCCCUCGAGCGaGGgccCCg -3'
miRNA:   3'- guCUUUGUG----GGGGAGUUCGUaCCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 89163 0.72 0.826449
Target:  5'- gAGGAGgGCCggcgggaggCCCUCGAagucgcGCGUGGUCCu -3'
miRNA:   3'- gUCUUUgUGG---------GGGAGUU------CGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 50457 0.86 0.205417
Target:  5'- gAGAGGCGCCCCUgUCGcGCAUGGUCCc -3'
miRNA:   3'- gUCUUUGUGGGGG-AGUuCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 37409 0.72 0.851309
Target:  5'- uCGGggGuCACCCCCUCuauguAGCGcuUGGaguucUCCa -3'
miRNA:   3'- -GUCuuU-GUGGGGGAGu----UCGU--ACC-----AGG- -5'
3650 3' -52.5 NC_001650.1 + 128473 0.77 0.589387
Target:  5'- uGGGcccCACCCCCUCGGGCAcgGGcCCg -3'
miRNA:   3'- gUCUuu-GUGGGGGAGUUCGUa-CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 37696 0.73 0.790804
Target:  5'- cCAGGucCACCCCCUUcauGAGCAgccugucggUGGUCa -3'
miRNA:   3'- -GUCUuuGUGGGGGAG---UUCGU---------ACCAGg -5'
3650 3' -52.5 NC_001650.1 + 94680 0.71 0.859196
Target:  5'- gAGGAGCGCCgCCUCG-GUcUGGUCg -3'
miRNA:   3'- gUCUUUGUGGgGGAGUuCGuACCAGg -5'
3650 3' -52.5 NC_001650.1 + 89204 0.7 0.908204
Target:  5'- gGGAAGCGCgaCCCCUCGcGGCA-GG-CCg -3'
miRNA:   3'- gUCUUUGUG--GGGGAGU-UCGUaCCaGG- -5'
3650 3' -52.5 NC_001650.1 + 132725 0.76 0.620417
Target:  5'- cCAGGuAAgACCCCUUCAGGUAguuguuugGGUCCa -3'
miRNA:   3'- -GUCU-UUgUGGGGGAGUUCGUa-------CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 134957 0.73 0.762498
Target:  5'- aGGggGCGCCgCCUCcacAGCAgcaucuggggGGUCCg -3'
miRNA:   3'- gUCuuUGUGGgGGAGu--UCGUa---------CCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.