miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 58748 0.68 0.94984
Target:  5'- gGGcGACACCCCCaUCuuccAGCAcgUGGcCCu -3'
miRNA:   3'- gUCuUUGUGGGGG-AGu---UCGU--ACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 134126 0.7 0.895359
Target:  5'- gGGggGCGCCCCCagcuguacUCuGGGCGccgcGGUCCc -3'
miRNA:   3'- gUCuuUGUGGGGG--------AG-UUCGUa---CCAGG- -5'
3650 3' -52.5 NC_001650.1 + 128473 0.77 0.589387
Target:  5'- uGGGcccCACCCCCUCGGGCAcgGGcCCg -3'
miRNA:   3'- gUCUuu-GUGGGGGAGUUCGUa-CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 797 0.69 0.945488
Target:  5'- cCGGccuCGCCCCCUCAuuuGCAU-GUCUc -3'
miRNA:   3'- -GUCuuuGUGGGGGAGUu--CGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 50457 0.86 0.205417
Target:  5'- gAGAGGCGCCCCUgUCGcGCAUGGUCCc -3'
miRNA:   3'- gUCUUUGUGGGGG-AGUuCGUACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 124172 0.66 0.983107
Target:  5'- aCAGGAACGCCCCCguguacucCAccccCGUGGgccCCa -3'
miRNA:   3'- -GUCUUUGUGGGGGa-------GUuc--GUACCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 31499 0.76 0.620417
Target:  5'- -uGAAGCGCCCCCgUCGGGCuugaggGGcUCCg -3'
miRNA:   3'- guCUUUGUGGGGG-AGUUCGua----CC-AGG- -5'
3650 3' -52.5 NC_001650.1 + 55090 0.67 0.981077
Target:  5'- uCAGAAucccACGCCCCCUaaaAAGCcaGGUaCUa -3'
miRNA:   3'- -GUCUU----UGUGGGGGAg--UUCGuaCCA-GG- -5'
3650 3' -52.5 NC_001650.1 + 135978 0.67 0.976478
Target:  5'- uCAGAGcaugGCGgCCUC-CAGGUacGUGGUCCu -3'
miRNA:   3'- -GUCUU----UGUgGGGGaGUUCG--UACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 32213 0.68 0.967177
Target:  5'- uCAGguACACCCCCUCcccuagcucaccagAGGCGgacUCCg -3'
miRNA:   3'- -GUCuuUGUGGGGGAG--------------UUCGUaccAGG- -5'
3650 3' -52.5 NC_001650.1 + 83098 0.68 0.96491
Target:  5'- aCAGGGcuAUAUCCCCcagcucCAGGCAccuccUGGUCCc -3'
miRNA:   3'- -GUCUU--UGUGGGGGa-----GUUCGU-----ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 15116 0.68 0.961485
Target:  5'- aCAucAGCACCCCCgUUggGcCGUGG-CCu -3'
miRNA:   3'- -GUcuUUGUGGGGG-AGuuC-GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 157490 0.68 0.957835
Target:  5'- gGGAggUGCCCCCagGcGCAUGGgCUa -3'
miRNA:   3'- gUCUuuGUGGGGGagUuCGUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 3474 0.69 0.940895
Target:  5'- uGGGAGCAgCCUgcCAGGCAUGGggaUCCa -3'
miRNA:   3'- gUCUUUGUgGGGgaGUUCGUACC---AGG- -5'
3650 3' -52.5 NC_001650.1 + 26950 0.69 0.936059
Target:  5'- uGGAGGCggcgcacaGCCCCUcCAGGCcgGGcCCg -3'
miRNA:   3'- gUCUUUG--------UGGGGGaGUUCGuaCCaGG- -5'
3650 3' -52.5 NC_001650.1 + 172854 0.69 0.925652
Target:  5'- gGGGGACugCCCaCUCAAcccCAUGG-CCa -3'
miRNA:   3'- gUCUUUGugGGG-GAGUUc--GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 55040 0.7 0.914264
Target:  5'- gCAGAAcccagUACCCgCgCGAGCcgGGUCCa -3'
miRNA:   3'- -GUCUUu----GUGGGgGaGUUCGuaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 37409 0.72 0.851309
Target:  5'- uCGGggGuCACCCCCUCuauguAGCGcuUGGaguucUCCa -3'
miRNA:   3'- -GUCuuU-GUGGGGGAGu----UCGU--ACC-----AGG- -5'
3650 3' -52.5 NC_001650.1 + 131990 0.72 0.843216
Target:  5'- gGGAGGCAgCgCCUUCAAGU--GGUCCa -3'
miRNA:   3'- gUCUUUGUgG-GGGAGUUCGuaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 23986 0.73 0.762498
Target:  5'- aGGAcuugaugucAGCGcCCCCCUCGGGCG-GGUCUc -3'
miRNA:   3'- gUCU---------UUGU-GGGGGAGUUCGUaCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.