miRNA display CGI


Results 61 - 80 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 3' -52.5 NC_001650.1 + 6147 0.69 0.925652
Target:  5'- gGGGGACugCCCaCUCAAcccCAUGG-CCa -3'
miRNA:   3'- gUCUUUGugGGG-GAGUUc--GUACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 183132 0.66 0.986505
Target:  5'- aGGGAGgACCaaCCCUCAGGCcaucuuaAUGG-CCu -3'
miRNA:   3'- gUCUUUgUGG--GGGAGUUCG-------UACCaGG- -5'
3650 3' -52.5 NC_001650.1 + 5001 0.69 0.925652
Target:  5'- cCGGAGGCcuaCCCCUCGAGCcccGG-CCu -3'
miRNA:   3'- -GUCUUUGug-GGGGAGUUCGua-CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 61389 0.66 0.984789
Target:  5'- uCAGggGCACCCUCUCucuugGGGCAacagcgauagucaUGGg-- -3'
miRNA:   3'- -GUCuuUGUGGGGGAG-----UUCGU-------------ACCagg -5'
3650 3' -52.5 NC_001650.1 + 81513 0.69 0.936059
Target:  5'- gGGAGGCGCUCCagacguUCAAGCAaaaGUCCa -3'
miRNA:   3'- gUCUUUGUGGGGg-----AGUUCGUac-CAGG- -5'
3650 3' -52.5 NC_001650.1 + 170181 0.69 0.940895
Target:  5'- uGGGAGCAgCCUgcCAGGCAUGGggaUCCa -3'
miRNA:   3'- gUCUUUGUgGGGgaGUUCGUACC---AGG- -5'
3650 3' -52.5 NC_001650.1 + 86179 0.66 0.983107
Target:  5'- ------gGCCCCCgaugcuacacUCGAGCG-GGUCCg -3'
miRNA:   3'- gucuuugUGGGGG----------AGUUCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 133207 0.67 0.973893
Target:  5'- -uGAGcccGCGCCCCCUCccAGCGU-GUCUc -3'
miRNA:   3'- guCUU---UGUGGGGGAGu-UCGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 167503 0.69 0.945488
Target:  5'- cCGGccuCGCCCCCUCAuuuGCAU-GUCUc -3'
miRNA:   3'- -GUCuuuGUGGGGGAGUu--CGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 32213 0.68 0.967177
Target:  5'- uCAGguACACCCCCUCcccuagcucaccagAGGCGgacUCCg -3'
miRNA:   3'- -GUCuuUGUGGGGGAG--------------UUCGUaccAGG- -5'
3650 3' -52.5 NC_001650.1 + 131188 0.68 0.961485
Target:  5'- aCAGggGCGCCgCCUCGaagacgGGCcucuggGaGUCCa -3'
miRNA:   3'- -GUCuuUGUGGgGGAGU------UCGua----C-CAGG- -5'
3650 3' -52.5 NC_001650.1 + 797 0.69 0.945488
Target:  5'- cCGGccuCGCCCCCUCAuuuGCAU-GUCUc -3'
miRNA:   3'- -GUCuuuGUGGGGGAGUu--CGUAcCAGG- -5'
3650 3' -52.5 NC_001650.1 + 142966 0.66 0.984968
Target:  5'- gGGAAACGCCCuggagaccgCCUCcgcaaacuccGGGCGccUGGUCUc -3'
miRNA:   3'- gUCUUUGUGGG---------GGAG----------UUCGU--ACCAGG- -5'
3650 3' -52.5 NC_001650.1 + 46489 0.68 0.961485
Target:  5'- uCAGAAGuuCACCCUCUCcccGGCGUcGGggCCg -3'
miRNA:   3'- -GUCUUU--GUGGGGGAGu--UCGUA-CCa-GG- -5'
3650 3' -52.5 NC_001650.1 + 111135 0.66 0.986668
Target:  5'- aGGGGACgcgcaaccccggGCCCUCUCAgggagggugugaGGCG-GGUCCc -3'
miRNA:   3'- gUCUUUG------------UGGGGGAGU------------UCGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 47805 0.68 0.961485
Target:  5'- uUAGGAACugCaCCCUgCGGGCAgacagGG-CCg -3'
miRNA:   3'- -GUCUUUGugG-GGGA-GUUCGUa----CCaGG- -5'
3650 3' -52.5 NC_001650.1 + 102195 0.7 0.895359
Target:  5'- cCAGAGACACCCCCaggcgcacucCAGGCAguucuuucaGGgagCCg -3'
miRNA:   3'- -GUCUUUGUGGGGGa---------GUUCGUa--------CCa--GG- -5'
3650 3' -52.5 NC_001650.1 + 37640 0.66 0.989622
Target:  5'- gCGGggGC-CCCCCgUCGGGUuccucaaggugGUGGacaUCCu -3'
miRNA:   3'- -GUCuuUGuGGGGG-AGUUCG-----------UACC---AGG- -5'
3650 3' -52.5 NC_001650.1 + 157335 0.66 0.989622
Target:  5'- -cGAAguGCAgCCCCUCcugaucGCA-GGUCCu -3'
miRNA:   3'- guCUU--UGUgGGGGAGuu----CGUaCCAGG- -5'
3650 3' -52.5 NC_001650.1 + 36467 0.66 0.988217
Target:  5'- aGGAGAU-CCCCCaccuguUCAGGCAgGGaCCg -3'
miRNA:   3'- gUCUUUGuGGGGG------AGUUCGUaCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.