Results 81 - 100 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3650 | 3' | -52.5 | NC_001650.1 | + | 158350 | 0.67 | 0.976478 |
Target: 5'- aAGgcGC-CCCCCUCGgcGGCcggGGUCa -3' miRNA: 3'- gUCuuUGuGGGGGAGU--UCGua-CCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 137017 | 0.72 | 0.826449 |
Target: 5'- gAGAGGCACCUCC-CAAacugggaguGCA-GGUCCa -3' miRNA: 3'- gUCUUUGUGGGGGaGUU---------CGUaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 110499 | 0.67 | 0.976478 |
Target: 5'- aAGAGGCcggACCCCC-CGAGCAauGUCa -3' miRNA: 3'- gUCUUUG---UGGGGGaGUUCGUacCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 96055 | 0.66 | 0.983107 |
Target: 5'- uCGGcAGCGCCCCC---GGCAcGcGUCCg -3' miRNA: 3'- -GUCuUUGUGGGGGaguUCGUaC-CAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 271 | 0.66 | 0.9833 |
Target: 5'- uCAGAgcacguaccugcacAGCGCCCCCUgCcggccgAGGCGauagcgcucuccuauUGGUCCg -3' miRNA: 3'- -GUCU--------------UUGUGGGGGA-G------UUCGU---------------ACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 8379 | 0.66 | 0.983107 |
Target: 5'- uCAGGAcccCugCCCCUCAuAGCcauUGG-CCa -3' miRNA: 3'- -GUCUUu--GugGGGGAGU-UCGu--ACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 47805 | 0.68 | 0.961485 |
Target: 5'- uUAGGAACugCaCCCUgCGGGCAgacagGG-CCg -3' miRNA: 3'- -GUCUUUGugG-GGGA-GUUCGUa----CCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 46489 | 0.68 | 0.961485 |
Target: 5'- uCAGAAGuuCACCCUCUCcccGGCGUcGGggCCg -3' miRNA: 3'- -GUCUUU--GUGGGGGAGu--UCGUA-CCa-GG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 117476 | 0.68 | 0.957835 |
Target: 5'- -cGGAGCGCCCCCcaccgUCAccAGC-UGGUUa -3' miRNA: 3'- guCUUUGUGGGGG-----AGU--UCGuACCAGg -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 157335 | 0.66 | 0.989622 |
Target: 5'- -cGAAguGCAgCCCCUCcugaucGCA-GGUCCu -3' miRNA: 3'- guCUU--UGUgGGGGAGuu----CGUaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 132938 | 0.68 | 0.957835 |
Target: 5'- -cGAGGguCCCCCcgcggcgCGAGCccuccgGUGGUCCg -3' miRNA: 3'- guCUUUguGGGGGa------GUUCG------UACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 73746 | 0.68 | 0.953954 |
Target: 5'- ---cAACGCCUCCUaCAAGCAgaugaUGGcUCCg -3' miRNA: 3'- gucuUUGUGGGGGA-GUUCGU-----ACC-AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 109280 | 0.69 | 0.945488 |
Target: 5'- gGGggGCGCCCCgCUCGucGCccUGG-CCa -3' miRNA: 3'- gUCuuUGUGGGG-GAGUu-CGu-ACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 68709 | 0.69 | 0.940895 |
Target: 5'- aAG-AGCGCCCCCUCGcggagacccagcGGCAcgucauggUGGcCCg -3' miRNA: 3'- gUCuUUGUGGGGGAGU------------UCGU--------ACCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 75673 | 0.66 | 0.989622 |
Target: 5'- ------gGCCCCCUgGcAGUGUGGUCUu -3' miRNA: 3'- gucuuugUGGGGGAgU-UCGUACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 37640 | 0.66 | 0.989622 |
Target: 5'- gCGGggGC-CCCCCgUCGGGUuccucaaggugGUGGacaUCCu -3' miRNA: 3'- -GUCuuUGuGGGGG-AGUUCG-----------UACC---AGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 73586 | 0.68 | 0.957835 |
Target: 5'- cCAGggGCAgggCCUCGuGCGUGGUCUc -3' miRNA: 3'- -GUCuuUGUgggGGAGUuCGUACCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 36467 | 0.66 | 0.988217 |
Target: 5'- aGGAGAU-CCCCCaccuguUCAGGCAgGGaCCg -3' miRNA: 3'- gUCUUUGuGGGGG------AGUUCGUaCCaGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 111135 | 0.66 | 0.986668 |
Target: 5'- aGGGGACgcgcaaccccggGCCCUCUCAgggagggugugaGGCG-GGUCCc -3' miRNA: 3'- gUCUUUG------------UGGGGGAGU------------UCGUaCCAGG- -5' |
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3650 | 3' | -52.5 | NC_001650.1 | + | 166978 | 0.66 | 0.9833 |
Target: 5'- uCAGAgcacguaccugcacAGCGCCCCCUgCcggccgAGGCGauagcgcucuccuauUGGUCCg -3' miRNA: 3'- -GUCU--------------UUGUGGGGGA-G------UUCGU---------------ACCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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