miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3650 5' -63.2 NC_001650.1 + 53559 0.65 0.646269
Target:  5'- aCGGCCCgGcgcaucucacaggaUCUGCCCGgCcGGGUGa- -3'
miRNA:   3'- cGCCGGGaC--------------AGACGGGC-GuCCCACgu -5'
3650 5' -63.2 NC_001650.1 + 100637 0.66 0.643358
Target:  5'- gGgGGCCCcugggaggGUCUGauggaggauuccaucCCCGU-GGGUGCAg -3'
miRNA:   3'- -CgCCGGGa-------CAGAC---------------GGGCGuCCCACGU- -5'
3650 5' -63.2 NC_001650.1 + 24077 0.66 0.639476
Target:  5'- gGCGGCCCUGgccgagaugGCCaugGCGGGGaUGa- -3'
miRNA:   3'- -CGCCGGGACaga------CGGg--CGUCCC-ACgu -5'
3650 5' -63.2 NC_001650.1 + 48880 0.66 0.629767
Target:  5'- aUGGUgCCUuuuaagGUUUGCCCGCGaGGUGCGc -3'
miRNA:   3'- cGCCG-GGA------CAGACGGGCGUcCCACGU- -5'
3650 5' -63.2 NC_001650.1 + 22566 0.66 0.629767
Target:  5'- -aGGCCUgccUGUC-GCCCGUccGGGGcgGCGg -3'
miRNA:   3'- cgCCGGG---ACAGaCGGGCG--UCCCa-CGU- -5'
3650 5' -63.2 NC_001650.1 + 87128 0.66 0.620059
Target:  5'- cUGGCCCUGgugCUGUUCu--GGGUGCu -3'
miRNA:   3'- cGCCGGGACa--GACGGGcguCCCACGu -5'
3650 5' -63.2 NC_001650.1 + 42850 0.66 0.610361
Target:  5'- cGUGGCCCcgggcacgugUGUC-GCCUGguGcGGUGUc -3'
miRNA:   3'- -CGCCGGG----------ACAGaCGGGCguC-CCACGu -5'
3650 5' -63.2 NC_001650.1 + 21624 0.66 0.610361
Target:  5'- gGCGccguCUCUGagCUGCCCGCGGGGcUGgGg -3'
miRNA:   3'- -CGCc---GGGACa-GACGGGCGUCCC-ACgU- -5'
3650 5' -63.2 NC_001650.1 + 110790 0.66 0.607453
Target:  5'- gGCGGcCCCUGUucgcguugcugaggCUGCUguuguUGCGGGG-GCGg -3'
miRNA:   3'- -CGCC-GGGACA--------------GACGG-----GCGUCCCaCGU- -5'
3650 5' -63.2 NC_001650.1 + 83201 0.66 0.591013
Target:  5'- aGCGcGCCCUG-CUGUCCaagcugaaCAGGGggGCGg -3'
miRNA:   3'- -CGC-CGGGACaGACGGGc-------GUCCCa-CGU- -5'
3650 5' -63.2 NC_001650.1 + 48040 0.66 0.591013
Target:  5'- cUGGCgCUGuUCUGCUCGCugcuGGGggGCGc -3'
miRNA:   3'- cGCCGgGAC-AGACGGGCGu---CCCa-CGU- -5'
3650 5' -63.2 NC_001650.1 + 129281 0.66 0.591013
Target:  5'- cGCGGCCaC-GUCcaGCCUgGCGGGGUcGCGc -3'
miRNA:   3'- -CGCCGG-GaCAGa-CGGG-CGUCCCA-CGU- -5'
3650 5' -63.2 NC_001650.1 + 30542 0.67 0.581376
Target:  5'- gGCGGCCaUG-CUGCCCaauCAGGGggagaGCGu -3'
miRNA:   3'- -CGCCGGgACaGACGGGc--GUCCCa----CGU- -5'
3650 5' -63.2 NC_001650.1 + 25162 0.67 0.562208
Target:  5'- uGgGuGCCCUGg--GCCCaGCAGGGcaGCAg -3'
miRNA:   3'- -CgC-CGGGACagaCGGG-CGUCCCa-CGU- -5'
3650 5' -63.2 NC_001650.1 + 75529 0.67 0.552686
Target:  5'- uGCGcGCCUcGUCcGCggCCGCAGGGggGCGc -3'
miRNA:   3'- -CGC-CGGGaCAGaCG--GGCGUCCCa-CGU- -5'
3650 5' -63.2 NC_001650.1 + 155973 0.67 0.533795
Target:  5'- gGCGGCCgUGcUgUGCCUGCccGGcUGCAc -3'
miRNA:   3'- -CGCCGGgAC-AgACGGGCGucCC-ACGU- -5'
3650 5' -63.2 NC_001650.1 + 89535 0.67 0.533795
Target:  5'- cGCGGCCCgggccagGUCcaggGUCaGCAGGGcgUGCGc -3'
miRNA:   3'- -CGCCGGGa------CAGa---CGGgCGUCCC--ACGU- -5'
3650 5' -63.2 NC_001650.1 + 72726 0.67 0.533795
Target:  5'- uCGGCCCcGUUga-CCGCGGGG-GCGu -3'
miRNA:   3'- cGCCGGGaCAGacgGGCGUCCCaCGU- -5'
3650 5' -63.2 NC_001650.1 + 24943 0.68 0.524435
Target:  5'- gGgGGUCCUG-CUGCCCuGCuGGGcccaggGCAc -3'
miRNA:   3'- -CgCCGGGACaGACGGG-CGuCCCa-----CGU- -5'
3650 5' -63.2 NC_001650.1 + 137621 0.68 0.524435
Target:  5'- -aGGCCCUGgc-GCCgGCuguGGGUGUu -3'
miRNA:   3'- cgCCGGGACagaCGGgCGu--CCCACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.