miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3653 3' -56.5 NC_001650.1 + 50650 0.66 0.913343
Target:  5'- cGAggGGCCgGUGcCCGCGGGGggCCUg- -3'
miRNA:   3'- aCUa-CCGG-CAC-GGUGUCUCgaGGAac -5'
3653 3' -56.5 NC_001650.1 + 122711 0.66 0.901118
Target:  5'- aGGUGGCCucccugGCCGCGGgaAGCUgCUg- -3'
miRNA:   3'- aCUACCGGca----CGGUGUC--UCGAgGAac -5'
3653 3' -56.5 NC_001650.1 + 23555 0.66 0.901118
Target:  5'- aGAUGGCCauaGCCG-AGAGCgUCCUc- -3'
miRNA:   3'- aCUACCGGca-CGGUgUCUCG-AGGAac -5'
3653 3' -56.5 NC_001650.1 + 122244 0.66 0.901118
Target:  5'- cGggGGCgagGUGCCcCAcGAGCUCCUc- -3'
miRNA:   3'- aCuaCCGg--CACGGuGU-CUCGAGGAac -5'
3653 3' -56.5 NC_001650.1 + 91783 0.66 0.894658
Target:  5'- uUGAaGaCCGUGCCGgAGAccuGCUUCUUGa -3'
miRNA:   3'- -ACUaCcGGCACGGUgUCU---CGAGGAAC- -5'
3653 3' -56.5 NC_001650.1 + 89165 0.66 0.887969
Target:  5'- gGAcagGGuCCuGUGCC-CGGGGCUCCg-- -3'
miRNA:   3'- aCUa--CC-GG-CACGGuGUCUCGAGGaac -5'
3653 3' -56.5 NC_001650.1 + 98053 0.66 0.881056
Target:  5'- cUGGUGGCCGUGaCC-CGGGcgagggcgauGCUUCUg- -3'
miRNA:   3'- -ACUACCGGCAC-GGuGUCU----------CGAGGAac -5'
3653 3' -56.5 NC_001650.1 + 27476 0.67 0.843299
Target:  5'- ---aGGCCGUaGCuCACGGccAGCUCCgUGg -3'
miRNA:   3'- acuaCCGGCA-CG-GUGUC--UCGAGGaAC- -5'
3653 3' -56.5 NC_001650.1 + 76756 0.67 0.83515
Target:  5'- cGAUGGCCa--CCGCAGAG-UCCUg- -3'
miRNA:   3'- aCUACCGGcacGGUGUCUCgAGGAac -5'
3653 3' -56.5 NC_001650.1 + 85287 0.69 0.782676
Target:  5'- gUGAUGGCCucaaugGCCAgGGAGaUCCUg- -3'
miRNA:   3'- -ACUACCGGca----CGGUgUCUCgAGGAac -5'
3653 3' -56.5 NC_001650.1 + 170151 0.69 0.782676
Target:  5'- aGAUGGCC--GCCACAGucccacguGCUCCc-- -3'
miRNA:   3'- aCUACCGGcaCGGUGUCu-------CGAGGaac -5'
3653 3' -56.5 NC_001650.1 + 3444 0.69 0.782676
Target:  5'- aGAUGGCC--GCCACAGucccacguGCUCCc-- -3'
miRNA:   3'- aCUACCGGcaCGGUGUCu-------CGAGGaac -5'
3653 3' -56.5 NC_001650.1 + 97726 0.7 0.695536
Target:  5'- cGAucUGGCCGgucGCCcuGCAGcAGCUCCUc- -3'
miRNA:   3'- aCU--ACCGGCa--CGG--UGUC-UCGAGGAac -5'
3653 3' -56.5 NC_001650.1 + 68436 0.75 0.421326
Target:  5'- uUGAUGGCCGUGCCGCuGGcGCacgCCg-- -3'
miRNA:   3'- -ACUACCGGCACGGUGuCU-CGa--GGaac -5'
3653 3' -56.5 NC_001650.1 + 49553 1.09 0.00289
Target:  5'- cUGAUGGCCGUGCCACAGAGCUCCUUGa -3'
miRNA:   3'- -ACUACCGGCACGGUGUCUCGAGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.