miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3653 5' -58.6 NC_001650.1 + 48334 0.66 0.854186
Target:  5'- gGCCGCGGg----GGUCAUGgaccccCUGGCCAu -3'
miRNA:   3'- -UGGCGUCaugagCCAGUGC------GACCGGU- -5'
3653 5' -58.6 NC_001650.1 + 132249 0.66 0.854186
Target:  5'- uGuuGgGGUACUCGG-C-CGC-GGCCAg -3'
miRNA:   3'- -UggCgUCAUGAGCCaGuGCGaCCGGU- -5'
3653 5' -58.6 NC_001650.1 + 155353 0.66 0.838577
Target:  5'- --gGCA--GCUCGGagGCGUUGGCCu -3'
miRNA:   3'- uggCGUcaUGAGCCagUGCGACCGGu -5'
3653 5' -58.6 NC_001650.1 + 29278 0.66 0.830502
Target:  5'- gGCCGCgcccaGGUACUCcccCACGUcGGCCAc -3'
miRNA:   3'- -UGGCG-----UCAUGAGccaGUGCGaCCGGU- -5'
3653 5' -58.6 NC_001650.1 + 27768 0.66 0.830502
Target:  5'- gGCCGUucuccuuuugGGUggGCUCGG-CAgGCaGGCCAg -3'
miRNA:   3'- -UGGCG----------UCA--UGAGCCaGUgCGaCCGGU- -5'
3653 5' -58.6 NC_001650.1 + 70836 0.66 0.822254
Target:  5'- -gCGCaAGcUGCU-GGcCAUGCUGGCCAg -3'
miRNA:   3'- ugGCG-UC-AUGAgCCaGUGCGACCGGU- -5'
3653 5' -58.6 NC_001650.1 + 121107 0.66 0.822254
Target:  5'- cGCgGCGGUGCUUGGgggcguugUCGCGCgccGCCc -3'
miRNA:   3'- -UGgCGUCAUGAGCC--------AGUGCGac-CGGu -5'
3653 5' -58.6 NC_001650.1 + 117850 0.66 0.813843
Target:  5'- cCCGgGGU-CagGGUCAUGCaGGCCGa -3'
miRNA:   3'- uGGCgUCAuGagCCAGUGCGaCCGGU- -5'
3653 5' -58.6 NC_001650.1 + 48845 0.67 0.805274
Target:  5'- -gCGCGucGCUCGcagacaUCAUGCUGGCCAu -3'
miRNA:   3'- ugGCGUcaUGAGCc-----AGUGCGACCGGU- -5'
3653 5' -58.6 NC_001650.1 + 69302 0.68 0.751014
Target:  5'- uUCGC-GUGCa-GGUCGCGCgcaGGCCGg -3'
miRNA:   3'- uGGCGuCAUGagCCAGUGCGa--CCGGU- -5'
3653 5' -58.6 NC_001650.1 + 120917 0.68 0.741573
Target:  5'- cGCCGCgAGcUGCg----CGCGCUGGCCAa -3'
miRNA:   3'- -UGGCG-UC-AUGagccaGUGCGACCGGU- -5'
3653 5' -58.6 NC_001650.1 + 26669 0.68 0.741573
Target:  5'- aGCCGCA-----CGGgccCACGCUGGCCu -3'
miRNA:   3'- -UGGCGUcaugaGCCa--GUGCGACCGGu -5'
3653 5' -58.6 NC_001650.1 + 157015 0.68 0.722427
Target:  5'- cGCC-CGGUGCcCGGcCACGUccUGGCCu -3'
miRNA:   3'- -UGGcGUCAUGaGCCaGUGCG--ACCGGu -5'
3653 5' -58.6 NC_001650.1 + 87600 0.68 0.702986
Target:  5'- gGCCGUcuacUACUuucUGGgCGCGCUGGCCAu -3'
miRNA:   3'- -UGGCGuc--AUGA---GCCaGUGCGACCGGU- -5'
3653 5' -58.6 NC_001650.1 + 100380 0.68 0.702986
Target:  5'- gUCGCGGaGCUgGGUCAUGUggUGGCUg -3'
miRNA:   3'- uGGCGUCaUGAgCCAGUGCG--ACCGGu -5'
3653 5' -58.6 NC_001650.1 + 114583 0.68 0.702986
Target:  5'- gGCUGCAGcuCUCGGaCAggugacggcaggUGCUGGCCAc -3'
miRNA:   3'- -UGGCGUCauGAGCCaGU------------GCGACCGGU- -5'
3653 5' -58.6 NC_001650.1 + 114931 0.69 0.693176
Target:  5'- cACCGgcuugaGGUGgaCGGUCuuGCUGGCCu -3'
miRNA:   3'- -UGGCg-----UCAUgaGCCAGugCGACCGGu -5'
3653 5' -58.6 NC_001650.1 + 108418 0.69 0.673419
Target:  5'- gGCCGCGG-ACUCGaggucGUCACGC--GCCAg -3'
miRNA:   3'- -UGGCGUCaUGAGC-----CAGUGCGacCGGU- -5'
3653 5' -58.6 NC_001650.1 + 72585 0.7 0.637575
Target:  5'- uGCUGCAGgcCUCGGacguggcgcccacggUggacaugauccgCACGCUGGCCAc -3'
miRNA:   3'- -UGGCGUCauGAGCC---------------A------------GUGCGACCGGU- -5'
3653 5' -58.6 NC_001650.1 + 49519 1.08 0.002363
Target:  5'- uACCGCAGUACUCGGUCACGCUGGCCAg -3'
miRNA:   3'- -UGGCGUCAUGAGCCAGUGCGACCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.