miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3657 5' -62.8 NC_001650.1 + 86919 0.67 0.611021
Target:  5'- gGCCCuGGuucGGCUCCugCGGaUGACcUGGu -3'
miRNA:   3'- -CGGGcCC---UCGAGGugGCC-GCUG-ACCu -5'
3657 5' -62.8 NC_001650.1 + 35695 0.67 0.611021
Target:  5'- gGCCgGGGGGCUCa--CGGCcGCgGGGu -3'
miRNA:   3'- -CGGgCCCUCGAGgugGCCGcUGaCCU- -5'
3657 5' -62.8 NC_001650.1 + 60964 0.67 0.60144
Target:  5'- uGCCCagcaccuacgGGGAGCUCC--UGGCcGACcUGGAc -3'
miRNA:   3'- -CGGG----------CCCUCGAGGugGCCG-CUG-ACCU- -5'
3657 5' -62.8 NC_001650.1 + 66876 0.67 0.60144
Target:  5'- gGCgCCGGGGGCgggggCgaGCCGGgGGCcggGGAg -3'
miRNA:   3'- -CG-GGCCCUCGa----Gg-UGGCCgCUGa--CCU- -5'
3657 5' -62.8 NC_001650.1 + 107125 0.67 0.5957
Target:  5'- gGCCUucaGGGAGC-CCAUCuacgacgaccccgagGGCGGCaUGGAg -3'
miRNA:   3'- -CGGG---CCCUCGaGGUGG---------------CCGCUG-ACCU- -5'
3657 5' -62.8 NC_001650.1 + 110874 0.67 0.591879
Target:  5'- aGCUaCGGGccccuaucGCcgCCGCCgcGGCGACUGGAu -3'
miRNA:   3'- -CGG-GCCCu-------CGa-GGUGG--CCGCUGACCU- -5'
3657 5' -62.8 NC_001650.1 + 145497 0.67 0.582343
Target:  5'- gGgCCGGGGGCUCC--UGGUcaGCUGGAg -3'
miRNA:   3'- -CgGGCCCUCGAGGugGCCGc-UGACCU- -5'
3657 5' -62.8 NC_001650.1 + 132837 0.67 0.582343
Target:  5'- --gCGGGAggagccGCggCCGCCgcGGCGACUGGGg -3'
miRNA:   3'- cggGCCCU------CGa-GGUGG--CCGCUGACCU- -5'
3657 5' -62.8 NC_001650.1 + 88617 0.67 0.582343
Target:  5'- gGCCaGGGGGgUCUACuccugccccggCGGCGACgggGGAg -3'
miRNA:   3'- -CGGgCCCUCgAGGUG-----------GCCGCUGa--CCU- -5'
3657 5' -62.8 NC_001650.1 + 71612 0.68 0.57284
Target:  5'- cGCUCGGGGGcCUCgGgaaaGGCGGcCUGGAg -3'
miRNA:   3'- -CGGGCCCUC-GAGgUgg--CCGCU-GACCU- -5'
3657 5' -62.8 NC_001650.1 + 164854 0.68 0.57284
Target:  5'- -aCCGGGAGC-CCggguGCCGcGCGGCccgGGGc -3'
miRNA:   3'- cgGGCCCUCGaGG----UGGC-CGCUGa--CCU- -5'
3657 5' -62.8 NC_001650.1 + 157716 0.68 0.563373
Target:  5'- uCCCGGGAGgaCCuCCGGgaGCUGGu -3'
miRNA:   3'- cGGGCCCUCgaGGuGGCCgcUGACCu -5'
3657 5' -62.8 NC_001650.1 + 82131 0.68 0.560541
Target:  5'- gGCCuCGGGAGCggauuuucauaacaUCCGCauGCccaGGCUGGAg -3'
miRNA:   3'- -CGG-GCCCUCG--------------AGGUGgcCG---CUGACCU- -5'
3657 5' -62.8 NC_001650.1 + 119944 0.68 0.553948
Target:  5'- uGCCCcGGGGCUCCugCgGGUGGaaGGu -3'
miRNA:   3'- -CGGGcCCUCGAGGugG-CCGCUgaCCu -5'
3657 5' -62.8 NC_001650.1 + 131547 0.68 0.553948
Target:  5'- cGCCCGGGGGCUggACgCGG-GGC-GGAg -3'
miRNA:   3'- -CGGGCCCUCGAggUG-GCCgCUGaCCU- -5'
3657 5' -62.8 NC_001650.1 + 60340 0.68 0.541767
Target:  5'- gGCCCuGGAGaccgcggacgcggcCUCCGCgGGCGGCgGGu -3'
miRNA:   3'- -CGGGcCCUC--------------GAGGUGgCCGCUGaCCu -5'
3657 5' -62.8 NC_001650.1 + 91152 0.68 0.525977
Target:  5'- gGCCgCGGGGGCUgCugCGGauGCUGcGGa -3'
miRNA:   3'- -CGG-GCCCUCGAgGugGCCgcUGAC-CU- -5'
3657 5' -62.8 NC_001650.1 + 22275 0.68 0.525054
Target:  5'- --gCGGGAuCUCCACCGGgGccucggaGCUGGAc -3'
miRNA:   3'- cggGCCCUcGAGGUGGCCgC-------UGACCU- -5'
3657 5' -62.8 NC_001650.1 + 79086 0.69 0.511277
Target:  5'- cCCCGGGccuGGCUCCgggcgcggccgcucgGCgGGCGGgaGGAg -3'
miRNA:   3'- cGGGCCC---UCGAGG---------------UGgCCGCUgaCCU- -5'
3657 5' -62.8 NC_001650.1 + 110960 0.69 0.507628
Target:  5'- uCUCGGGGGCUUCGggGGCGgcuGCUGGGg -3'
miRNA:   3'- cGGGCCCUCGAGGUggCCGC---UGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.