miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
366 5' -59.9 AC_000011.1 + 34299 0.66 0.359808
Target:  5'- cCGGGaCCCGgGGUcucuucgcugCAUGGCggGCGGGg -3'
miRNA:   3'- -GCCUcGGGCgCCG----------GUACCGaaCGUUC- -5'
366 5' -59.9 AC_000011.1 + 8824 0.66 0.359808
Target:  5'- uGGAGa-UGCGGcCCAUGaGCU-GCGAGa -3'
miRNA:   3'- gCCUCggGCGCC-GGUAC-CGAaCGUUC- -5'
366 5' -59.9 AC_000011.1 + 10250 0.66 0.35127
Target:  5'- aGGugauGCCgGCGGCgGUGGUggaggcgcGCGGGa -3'
miRNA:   3'- gCCu---CGGgCGCCGgUACCGaa------CGUUC- -5'
366 5' -59.9 AC_000011.1 + 3107 0.66 0.35127
Target:  5'- -uGuGCUCGaacucgGGCCAgGGCUUGCGAGc -3'
miRNA:   3'- gcCuCGGGCg-----CCGGUaCCGAACGUUC- -5'
366 5' -59.9 AC_000011.1 + 3162 0.66 0.334629
Target:  5'- uGGAGCCCGauGCCAUGuccagagugaGCcUGaCGGGg -3'
miRNA:   3'- gCCUCGGGCgcCGGUAC----------CGaAC-GUUC- -5'
366 5' -59.9 AC_000011.1 + 11104 0.66 0.334629
Target:  5'- aGGAGCCCgaggagaugcgcGCGGCCcgGuuccacGCgggGCGGGa -3'
miRNA:   3'- gCCUCGGG------------CGCCGGuaC------CGaa-CGUUC- -5'
366 5' -59.9 AC_000011.1 + 9296 0.66 0.334629
Target:  5'- gGGGGCCUGCGucGCCGgcGGCgcacggGCAGa -3'
miRNA:   3'- gCCUCGGGCGC--CGGUa-CCGaa----CGUUc -5'
366 5' -59.9 AC_000011.1 + 18066 0.66 0.334629
Target:  5'- ---cGCCgGUGGCCGUGGCccGCGc- -3'
miRNA:   3'- gccuCGGgCGCCGGUACCGaaCGUuc -5'
366 5' -59.9 AC_000011.1 + 12702 0.66 0.326528
Target:  5'- cCGGGGCCUGCacGCCccacaGGCccUGCAAGu -3'
miRNA:   3'- -GCCUCGGGCGc-CGGua---CCGa-ACGUUC- -5'
366 5' -59.9 AC_000011.1 + 4995 0.66 0.321737
Target:  5'- -uGAGUCCGuCGGCCAUgggcauuuuggagagGGUuugUUGCAAGa -3'
miRNA:   3'- gcCUCGGGC-GCCGGUA---------------CCG---AACGUUC- -5'
366 5' -59.9 AC_000011.1 + 24510 0.67 0.295586
Target:  5'- aCGG-GUUCGUGcGCCA-GGCcUGCAAGa -3'
miRNA:   3'- -GCCuCGGGCGC-CGGUaCCGaACGUUC- -5'
366 5' -59.9 AC_000011.1 + 10972 0.67 0.280991
Target:  5'- aCGGcGGCCgCgGCGGUCGUGGCUggaaguugcUGCuGGg -3'
miRNA:   3'- -GCC-UCGG-G-CGCCGGUACCGA---------ACGuUC- -5'
366 5' -59.9 AC_000011.1 + 5222 0.68 0.247015
Target:  5'- aGGGGUgCGCgccgGGCUggGcGCUUGCGAGg -3'
miRNA:   3'- gCCUCGgGCG----CCGGuaC-CGAACGUUC- -5'
366 5' -59.9 AC_000011.1 + 9862 0.69 0.222344
Target:  5'- aGGuGCCCGUGGagc-GGCUcaUGCAGGa -3'
miRNA:   3'- gCCuCGGGCGCCgguaCCGA--ACGUUC- -5'
366 5' -59.9 AC_000011.1 + 11554 0.69 0.199802
Target:  5'- aGGAGCCaGCGGCCcucgGGCUcgGUGAu -3'
miRNA:   3'- gCCUCGGgCGCCGGua--CCGAa-CGUUc -5'
366 5' -59.9 AC_000011.1 + 8493 0.7 0.174445
Target:  5'- uCGGGGCCCGgaGGCaggGGCg-GCAGGg -3'
miRNA:   3'- -GCCUCGGGCg-CCGguaCCGaaCGUUC- -5'
366 5' -59.9 AC_000011.1 + 15920 0.72 0.121491
Target:  5'- cCGGAGaCgCGCGGCCAcGGCggcgGCAGc -3'
miRNA:   3'- -GCCUC-GgGCGCCGGUaCCGaa--CGUUc -5'
366 5' -59.9 AC_000011.1 + 23061 0.74 0.087252
Target:  5'- aGGAGCUgGCGGCCGUgGGCUucagcuaccccccggUGCGGa -3'
miRNA:   3'- gCCUCGGgCGCCGGUA-CCGA---------------ACGUUc -5'
366 5' -59.9 AC_000011.1 + 21168 1.09 0.000186
Target:  5'- cCGGAGCCCGCGGCCAUGGCUUGCAAGa -3'
miRNA:   3'- -GCCUCGGGCGCCGGUACCGAACGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.