miRNA display CGI


Results 21 - 40 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3660 3' -63.1 NC_001650.1 + 158297 0.66 0.635303
Target:  5'- aGGGGCaGguGUuucAGCucucGCuGCUGCCCUu -3'
miRNA:   3'- gCCCCG-CguCG---UCGu---UGuCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 139564 0.66 0.635303
Target:  5'- aGGGGUGCAGgaAGCAAaaaAGCUagGCCa- -3'
miRNA:   3'- gCCCCGCGUCg-UCGUUg--UCGG--CGGgg -5'
3660 3' -63.1 NC_001650.1 + 77947 0.66 0.635303
Target:  5'- gCGGGG-GCGGCuGCGaggcaccgagggGCcGUCGCgCCCa -3'
miRNA:   3'- -GCCCCgCGUCGuCGU------------UGuCGGCG-GGG- -5'
3660 3' -63.1 NC_001650.1 + 61333 0.66 0.635303
Target:  5'- cCGGGG-GCGGCGGgGGaGGCgaGCUCCu -3'
miRNA:   3'- -GCCCCgCGUCGUCgUUgUCGg-CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 31887 0.66 0.635303
Target:  5'- aCGGGGaagugagaGUucuGCAGgGACAGggGCCCCg -3'
miRNA:   3'- -GCCCCg-------CGu--CGUCgUUGUCggCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 181551 0.66 0.633365
Target:  5'- gCGGGGauuuccuguGCAGC--CGGCCGCCUCc -3'
miRNA:   3'- -GCCCCgcgu-----CGUCGuuGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 14844 0.66 0.633365
Target:  5'- gCGGGGauuuccuguGCAGC--CGGCCGCCUCc -3'
miRNA:   3'- -GCCCCgcgu-----CGUCGuuGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 79101 0.66 0.632396
Target:  5'- -cGGGCGCGGCcGCucggcgggcgggagGAgGGCCaGUCCCc -3'
miRNA:   3'- gcCCCGCGUCGuCG--------------UUgUCGG-CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 134103 0.66 0.625613
Target:  5'- -uGGGCGCcGCGGUcccAGgGGCgGCCUCu -3'
miRNA:   3'- gcCCCGCGuCGUCG---UUgUCGgCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 47280 0.66 0.625613
Target:  5'- aGGGGCGCccGCGagGAUAGCcCGCCgCu -3'
miRNA:   3'- gCCCCGCGu-CGUcgUUGUCG-GCGGgG- -5'
3660 3' -63.1 NC_001650.1 + 24398 0.66 0.625613
Target:  5'- gCGGaGGa-CAGCGGCAccucCAGCgCGaCCCCg -3'
miRNA:   3'- -GCC-CCgcGUCGUCGUu---GUCG-GC-GGGG- -5'
3660 3' -63.1 NC_001650.1 + 79464 0.66 0.625613
Target:  5'- gCGGGGCGUGGaccCucUGGCUGCCCUg -3'
miRNA:   3'- -GCCCCGCGUCgucGuuGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 102571 0.66 0.625613
Target:  5'- ----cCGCAGCAGCAggcGCAGaCGCCCUc -3'
miRNA:   3'- gccccGCGUCGUCGU---UGUCgGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 111080 0.66 0.625613
Target:  5'- aGGGGCucCAGCGGCGccaggcgcgaggGCGGCgGUCgCg -3'
miRNA:   3'- gCCCCGc-GUCGUCGU------------UGUCGgCGGgG- -5'
3660 3' -63.1 NC_001650.1 + 117691 0.66 0.625613
Target:  5'- uGGaGGCGUuuaucauGUAG--ACGGCCGCCCg -3'
miRNA:   3'- gCC-CCGCGu------CGUCguUGUCGGCGGGg -5'
3660 3' -63.1 NC_001650.1 + 21905 0.66 0.621738
Target:  5'- gGGGGCGacgucccuggacaGGguGCAG-GGCCcCCCCg -3'
miRNA:   3'- gCCCCGCg------------UCguCGUUgUCGGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 130071 0.66 0.615929
Target:  5'- gGGGGUGgAGagGGCcggggagggggGAgAGCCGCCCg -3'
miRNA:   3'- gCCCCGCgUCg-UCG-----------UUgUCGGCGGGg -5'
3660 3' -63.1 NC_001650.1 + 47780 0.66 0.615929
Target:  5'- cCGGGGUGcCAGaCuGUAcuGCcguGCCGCCaCCa -3'
miRNA:   3'- -GCCCCGC-GUC-GuCGU--UGu--CGGCGG-GG- -5'
3660 3' -63.1 NC_001650.1 + 132611 0.66 0.615929
Target:  5'- gCGGaGGCGCuGGCccccaaccuGCAgGCGGCCuCCCCc -3'
miRNA:   3'- -GCC-CCGCG-UCGu--------CGU-UGUCGGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 120145 0.66 0.615929
Target:  5'- gCGGGG-GCAcCAGCcuCAGCagGUCCCu -3'
miRNA:   3'- -GCCCCgCGUcGUCGuuGUCGg-CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.