miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3660 5' -56.9 NC_001650.1 + 78592 0.67 0.847717
Target:  5'- uCCACcuCGGCAACuggaggcugugcgGGCGccGCUGCGGCAg -3'
miRNA:   3'- -GGUGucGUCGUUG-------------UCGU--CGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 136077 0.67 0.840475
Target:  5'- cCCGCGGCcgccaugaaGGCGGgGGCGGCCuugucCAGCc -3'
miRNA:   3'- -GGUGUCG---------UCGUUgUCGUCGGc----GUCGu -5'
3660 5' -56.9 NC_001650.1 + 37579 0.67 0.840475
Target:  5'- aCGaGGCGGUgcgGGCGGCGGCCG-AGCGc -3'
miRNA:   3'- gGUgUCGUCG---UUGUCGUCGGCgUCGU- -5'
3660 5' -56.9 NC_001650.1 + 68556 0.67 0.840475
Target:  5'- aCGguGCGGUAGCgGGC-GCCGCGGgGg -3'
miRNA:   3'- gGUguCGUCGUUG-UCGuCGGCGUCgU- -5'
3660 5' -56.9 NC_001650.1 + 69075 0.67 0.840475
Target:  5'- aCCAUgugucuGGCGGcCAugGGCccgGGCgCGCGGCAc -3'
miRNA:   3'- -GGUG------UCGUC-GUugUCG---UCG-GCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 135838 0.67 0.838026
Target:  5'- aCCGCGGUGGgGACGGCgcgggcgccaggcuAGCUGUGGUg -3'
miRNA:   3'- -GGUGUCGUCgUUGUCG--------------UCGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 57557 0.67 0.832249
Target:  5'- gCugGGCcugugguuGCAGCuGCGGCUGgGGCAg -3'
miRNA:   3'- gGugUCGu-------CGUUGuCGUCGGCgUCGU- -5'
3660 5' -56.9 NC_001650.1 + 147743 0.67 0.832249
Target:  5'- gUACAGUuucccccuagGGUGu--GCAGCCGCAGCGu -3'
miRNA:   3'- gGUGUCG----------UCGUuguCGUCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 164839 0.67 0.823842
Target:  5'- gCCGC-GCGGCccggGGCGGCguuccgcucgGGCUGCAGCc -3'
miRNA:   3'- -GGUGuCGUCG----UUGUCG----------UCGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 110894 0.67 0.821285
Target:  5'- gCCGCcGCGGCGACuggaugggggggcgAGCAGgCCcCGGCAc -3'
miRNA:   3'- -GGUGuCGUCGUUG--------------UCGUC-GGcGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 29724 0.67 0.818713
Target:  5'- cCCACAGCAGgAcgaguucgcgcuagcGCcccaGGCGGCCGC-GCc -3'
miRNA:   3'- -GGUGUCGUCgU---------------UG----UCGUCGGCGuCGu -5'
3660 5' -56.9 NC_001650.1 + 49423 0.67 0.81526
Target:  5'- cCCGCAGgGGgGugAGCaccAGgCGCAGCu -3'
miRNA:   3'- -GGUGUCgUCgUugUCG---UCgGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 30918 0.68 0.806514
Target:  5'- gCCGCGGaCAGgGGCGG-GGUCGUGGCAc -3'
miRNA:   3'- -GGUGUC-GUCgUUGUCgUCGGCGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 163300 0.68 0.806514
Target:  5'- gCCAUGGUGGaCAcccuccucACGGCGGCCccgGCGGCGg -3'
miRNA:   3'- -GGUGUCGUC-GU--------UGUCGUCGG---CGUCGU- -5'
3660 5' -56.9 NC_001650.1 + 147500 0.68 0.806514
Target:  5'- gCC-CAGUGGCccgucgccguGGCGGCAcGCUGCGGCu -3'
miRNA:   3'- -GGuGUCGUCG----------UUGUCGU-CGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 146467 0.68 0.806514
Target:  5'- cCCGCGGCccuaGGCGGCccgGGC-GCCGCgAGCc -3'
miRNA:   3'- -GGUGUCG----UCGUUG---UCGuCGGCG-UCGu -5'
3660 5' -56.9 NC_001650.1 + 131837 0.68 0.80563
Target:  5'- gCCGCcagcucgggccgGGUGGcCAGCAGCAGCUGCgcccacuGGCGg -3'
miRNA:   3'- -GGUG------------UCGUC-GUUGUCGUCGGCG-------UCGU- -5'
3660 5' -56.9 NC_001650.1 + 42589 0.68 0.79761
Target:  5'- gCCACGGgGG-GGCuGCAGCUGCAGa- -3'
miRNA:   3'- -GGUGUCgUCgUUGuCGUCGGCGUCgu -5'
3660 5' -56.9 NC_001650.1 + 132265 0.68 0.79761
Target:  5'- uCCGCGuCGGgGACGGUguugggguacucGGCCGCGGCc -3'
miRNA:   3'- -GGUGUcGUCgUUGUCG------------UCGGCGUCGu -5'
3660 5' -56.9 NC_001650.1 + 102668 0.68 0.79761
Target:  5'- uCCugGGCGGCcugcugcugGACGGgcacgacgcaCGGCUGCAGCu -3'
miRNA:   3'- -GGugUCGUCG---------UUGUC----------GUCGGCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.