miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3663 3' -66.1 NC_001650.1 + 141431 0.66 0.468516
Target:  5'- cCCCGGG-CUCCCGaUGCgCCCGaUCUc -3'
miRNA:   3'- aGGGCCCgGAGGGC-GCG-GGGUcAGAu -5'
3663 3' -66.1 NC_001650.1 + 134363 0.67 0.459863
Target:  5'- ---aGGGCCgCCCGCggucGCCCCcuuGGUCUGg -3'
miRNA:   3'- agggCCCGGaGGGCG----CGGGG---UCAGAU- -5'
3663 3' -66.1 NC_001650.1 + 59940 0.67 0.459863
Target:  5'- gCCaCGGGCCcCUCGaCGCCCCuGUa-- -3'
miRNA:   3'- aGG-GCCCGGaGGGC-GCGGGGuCAgau -5'
3663 3' -66.1 NC_001650.1 + 51757 0.67 0.459863
Target:  5'- cUCUCGGGUCUUCacaGCCUCAGUCc- -3'
miRNA:   3'- -AGGGCCCGGAGGgcgCGGGGUCAGau -5'
3663 3' -66.1 NC_001650.1 + 110904 0.67 0.451296
Target:  5'- -gCCuGGCCUgCCCGCuggGUCCCGGUCc- -3'
miRNA:   3'- agGGcCCGGA-GGGCG---CGGGGUCAGau -5'
3663 3' -66.1 NC_001650.1 + 107060 0.67 0.451296
Target:  5'- cCCCGGGCCcgacCCCaGCGCCCacccCUGc -3'
miRNA:   3'- aGGGCCCGGa---GGG-CGCGGGgucaGAU- -5'
3663 3' -66.1 NC_001650.1 + 132555 0.67 0.442817
Target:  5'- cCCCGGGCgaCgCGC-CCCCGGUg-- -3'
miRNA:   3'- aGGGCCCGgaGgGCGcGGGGUCAgau -5'
3663 3' -66.1 NC_001650.1 + 50819 0.67 0.442817
Target:  5'- uUCUCGGGCa--CCGCgGCCCCGG-Cg- -3'
miRNA:   3'- -AGGGCCCGgagGGCG-CGGGGUCaGau -5'
3663 3' -66.1 NC_001650.1 + 148010 0.67 0.441974
Target:  5'- gCCCGGGCgucgcggcaggcuCUCCaggaGCGuguuCCCCGGUCg- -3'
miRNA:   3'- aGGGCCCG-------------GAGGg---CGC----GGGGUCAGau -5'
3663 3' -66.1 NC_001650.1 + 111148 0.67 0.43193
Target:  5'- cCCCGGGcCCUCUCagggagggugugagGCggGUCCCAGUCa- -3'
miRNA:   3'- aGGGCCC-GGAGGG--------------CG--CGGGGUCAGau -5'
3663 3' -66.1 NC_001650.1 + 47221 0.67 0.426133
Target:  5'- aUUUgGGGUCUCgCGCGCgCaCCAGUCUc -3'
miRNA:   3'- -AGGgCCCGGAGgGCGCG-G-GGUCAGAu -5'
3663 3' -66.1 NC_001650.1 + 126960 0.67 0.417932
Target:  5'- cCCCGGGCCccUCgCCGCucGUCCCcGUCc- -3'
miRNA:   3'- aGGGCCCGG--AG-GGCG--CGGGGuCAGau -5'
3663 3' -66.1 NC_001650.1 + 22583 0.67 0.417932
Target:  5'- gUCCGGGgCggCgGCGCCUCGGUCUu -3'
miRNA:   3'- aGGGCCCgGagGgCGCGGGGUCAGAu -5'
3663 3' -66.1 NC_001650.1 + 21938 0.67 0.417932
Target:  5'- cUCCCcGGCCUCCUucuGCGgacCCCCGG-CUAc -3'
miRNA:   3'- -AGGGcCCGGAGGG---CGC---GGGGUCaGAU- -5'
3663 3' -66.1 NC_001650.1 + 130213 0.67 0.409829
Target:  5'- gCCCGcGGCCucgUCCCGCGCCgCCc-UCa- -3'
miRNA:   3'- aGGGC-CCGG---AGGGCGCGG-GGucAGau -5'
3663 3' -66.1 NC_001650.1 + 127267 0.68 0.401823
Target:  5'- cCCCGGGC--CCgGCGCCCCcucGUCc- -3'
miRNA:   3'- aGGGCCCGgaGGgCGCGGGGu--CAGau -5'
3663 3' -66.1 NC_001650.1 + 61244 0.68 0.401823
Target:  5'- aUCUCGGGCCUCUacacgagGCaGUCCCAGUg-- -3'
miRNA:   3'- -AGGGCCCGGAGGg------CG-CGGGGUCAgau -5'
3663 3' -66.1 NC_001650.1 + 145973 0.68 0.401823
Target:  5'- gUCCCGGGaCCcgUUgGCGUCCCAGaUCUu -3'
miRNA:   3'- -AGGGCCC-GGa-GGgCGCGGGGUC-AGAu -5'
3663 3' -66.1 NC_001650.1 + 60048 0.68 0.393133
Target:  5'- aUCCUGGGCUgccugCCCGUgaccaugGCCgUGGUCUAa -3'
miRNA:   3'- -AGGGCCCGGa----GGGCG-------CGGgGUCAGAU- -5'
3663 3' -66.1 NC_001650.1 + 29752 0.68 0.378413
Target:  5'- cCCCaGGCgg-CCGCGCCCCAGUa-- -3'
miRNA:   3'- aGGGcCCGgagGGCGCGGGGUCAgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.