Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3663 | 5' | -50.9 | NC_001650.1 | + | 79464 | 0.68 | 0.983107 |
Target: 5'- gCG-GGGCGUGgacccucUGGCUGCCCUGauuuuAGGu -3' miRNA: 3'- -GCaCCUGCACaa-----AUCGAUGGGGU-----UCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 49123 | 0.68 | 0.984968 |
Target: 5'- aCGUGGugGUGgagaccgUGGUcuccgACCUCAAGa -3' miRNA: 3'- -GCACCugCACaa-----AUCGa----UGGGGUUCc -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 122471 | 0.68 | 0.986668 |
Target: 5'- aCGUGGACGUGcccguGCccguCUUCAAGGa -3' miRNA: 3'- -GCACCUGCACaaau-CGau--GGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 131557 | 0.67 | 0.990893 |
Target: 5'- -cUGGACGcGg--GGCggagaaACCCCGAGGc -3' miRNA: 3'- gcACCUGCaCaaaUCGa-----UGGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 122391 | 0.67 | 0.992039 |
Target: 5'- uCGUGGAaGUGguccAGCaggUugCCCAGGGc -3' miRNA: 3'- -GCACCUgCACaaa-UCG---AugGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 124095 | 0.67 | 0.992039 |
Target: 5'- aCGUGGGCGacgcugUUGGCgAUCCCGGGc -3' miRNA: 3'- -GCACCUGCaca---AAUCGaUGGGGUUCc -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 113741 | 0.67 | 0.993066 |
Target: 5'- gCGUGGGCGggaugGGgUACCCCucccguAAGGc -3' miRNA: 3'- -GCACCUGCacaaaUCgAUGGGG------UUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 59972 | 0.67 | 0.993066 |
Target: 5'- gCGUGucCGUGgggGGCgccucgcCCCCGGGGg -3' miRNA: 3'- -GCACcuGCACaaaUCGau-----GGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 129902 | 0.67 | 0.994804 |
Target: 5'- cCGUGaGCuUGgacAGCUGCCCCGGGa -3' miRNA: 3'- -GCACcUGcACaaaUCGAUGGGGUUCc -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 50704 | 0.66 | 0.995529 |
Target: 5'- gGUGGugGUaagugaaaguugGggUAGC-GCCCCGcgAGGa -3' miRNA: 3'- gCACCugCA------------CaaAUCGaUGGGGU--UCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 157499 | 0.66 | 0.995986 |
Target: 5'- gCGgGGGCGgggagGUgcccccaggcgcaugGGCUacaGCCCCGAGGg -3' miRNA: 3'- -GCaCCUGCa----CAaa-------------UCGA---UGGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 4196 | 0.67 | 0.990893 |
Target: 5'- cCGUGGGCG-----AGCUccGCCCCGGGc -3' miRNA: 3'- -GCACCUGCacaaaUCGA--UGGGGUUCc -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 170903 | 0.67 | 0.990893 |
Target: 5'- cCGUGGGCG-----AGCUccGCCCCGGGc -3' miRNA: 3'- -GCACCUGCacaaaUCGA--UGGGGUUCc -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 85806 | 0.69 | 0.976478 |
Target: 5'- aGUGGGC------AGCUugCCCGGGGg -3' miRNA: 3'- gCACCUGcacaaaUCGAugGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 16198 | 0.7 | 0.961485 |
Target: 5'- uGUGGGCGgGUaggcaugUAGCcaggUugCCCAAGGa -3' miRNA: 3'- gCACCUGCaCAa------AUCG----AugGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 182905 | 0.7 | 0.961485 |
Target: 5'- uGUGGGCGgGUaggcaugUAGCcaggUugCCCAAGGa -3' miRNA: 3'- gCACCUGCaCAa------AUCG----AugGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 77256 | 0.72 | 0.920081 |
Target: 5'- gCGUGGACacg---GGCUcCCCCGAGGc -3' miRNA: 3'- -GCACCUGcacaaaUCGAuGGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 134556 | 0.73 | 0.874334 |
Target: 5'- uCGaUGGGCGUGUgggacacGGaggGCCCCGGGGg -3' miRNA: 3'- -GC-ACCUGCACAaa-----UCga-UGGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 97996 | 0.74 | 0.843216 |
Target: 5'- cCGUGGGCG-GUUacg--ACCCCAAGGg -3' miRNA: 3'- -GCACCUGCaCAAaucgaUGGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 56999 | 0.66 | 0.998029 |
Target: 5'- aGUGGaACGgccaGUaggcgcGCUACCCCcGGGa -3' miRNA: 3'- gCACC-UGCa---CAaau---CGAUGGGGuUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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