Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3663 | 5' | -50.9 | NC_001650.1 | + | 129902 | 0.67 | 0.994804 |
Target: 5'- cCGUGaGCuUGgacAGCUGCCCCGGGa -3' miRNA: 3'- -GCACcUGcACaaaUCGAUGGGGUUCc -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 73553 | 0.67 | 0.993447 |
Target: 5'- --cGGACGUGUccuaCUuucaguccuccaacaGCCCCAGGGg -3' miRNA: 3'- gcaCCUGCACAaaucGA---------------UGGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 59972 | 0.67 | 0.993066 |
Target: 5'- gCGUGucCGUGgggGGCgccucgcCCCCGGGGg -3' miRNA: 3'- -GCACcuGCACaaaUCGau-----GGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 113741 | 0.67 | 0.993066 |
Target: 5'- gCGUGGGCGggaugGGgUACCCCucccguAAGGc -3' miRNA: 3'- -GCACCUGCacaaaUCgAUGGGG------UUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 124095 | 0.67 | 0.992039 |
Target: 5'- aCGUGGGCGacgcugUUGGCgAUCCCGGGc -3' miRNA: 3'- -GCACCUGCaca---AAUCGaUGGGGUUCc -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 122391 | 0.67 | 0.992039 |
Target: 5'- uCGUGGAaGUGguccAGCaggUugCCCAGGGc -3' miRNA: 3'- -GCACCUgCACaaa-UCG---AugGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 131557 | 0.67 | 0.990893 |
Target: 5'- -cUGGACGcGg--GGCggagaaACCCCGAGGc -3' miRNA: 3'- gcACCUGCaCaaaUCGa-----UGGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 4196 | 0.67 | 0.990893 |
Target: 5'- cCGUGGGCG-----AGCUccGCCCCGGGc -3' miRNA: 3'- -GCACCUGCacaaaUCGA--UGGGGUUCc -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 170903 | 0.67 | 0.990893 |
Target: 5'- cCGUGGGCG-----AGCUccGCCCCGGGc -3' miRNA: 3'- -GCACCUGCacaaaUCGA--UGGGGUUCc -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 117664 | 0.67 | 0.990893 |
Target: 5'- --cGGGCGUGg--GGCacACCCCGcccAGGa -3' miRNA: 3'- gcaCCUGCACaaaUCGa-UGGGGU---UCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 122471 | 0.68 | 0.986668 |
Target: 5'- aCGUGGACGUGcccguGCccguCUUCAAGGa -3' miRNA: 3'- -GCACCUGCACaaau-CGau--GGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 49123 | 0.68 | 0.984968 |
Target: 5'- aCGUGGugGUGgagaccgUGGUcuccgACCUCAAGa -3' miRNA: 3'- -GCACCugCACaa-----AUCGa----UGGGGUUCc -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 79464 | 0.68 | 0.983107 |
Target: 5'- gCG-GGGCGUGgacccucUGGCUGCCCUGauuuuAGGu -3' miRNA: 3'- -GCaCCUGCACaa-----AUCGAUGGGGU-----UCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 57976 | 0.69 | 0.981077 |
Target: 5'- cCG-GGGCGUcgaugGGCUguccgaaccucuGCCCCAGGGa -3' miRNA: 3'- -GCaCCUGCAcaaa-UCGA------------UGGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 85806 | 0.69 | 0.976478 |
Target: 5'- aGUGGGC------AGCUugCCCGGGGg -3' miRNA: 3'- gCACCUGcacaaaUCGAugGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 66658 | 0.7 | 0.96491 |
Target: 5'- -cUGGGCGUGau--GCUGCcguCCCGGGGg -3' miRNA: 3'- gcACCUGCACaaauCGAUG---GGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 182905 | 0.7 | 0.961485 |
Target: 5'- uGUGGGCGgGUaggcaugUAGCcaggUugCCCAAGGa -3' miRNA: 3'- gCACCUGCaCAa------AUCG----AugGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 16198 | 0.7 | 0.961485 |
Target: 5'- uGUGGGCGgGUaggcaugUAGCcaggUugCCCAAGGa -3' miRNA: 3'- gCACCUGCaCAa------AUCG----AugGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 21406 | 0.7 | 0.957835 |
Target: 5'- aCGUGcccACGUGgc-AGCacgGCCCCGGGGg -3' miRNA: 3'- -GCACc--UGCACaaaUCGa--UGGGGUUCC- -5' |
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3663 | 5' | -50.9 | NC_001650.1 | + | 61299 | 0.71 | 0.94984 |
Target: 5'- cCGUGGGCGUG---GGCUAUCUgGAGc -3' miRNA: 3'- -GCACCUGCACaaaUCGAUGGGgUUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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