miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
367 3' -55.7 AC_000011.1 + 9275 0.66 0.547055
Target:  5'- gGCGGCaGUGGUgGCGGgggagggggcCUGcgucGCCGGCGGCg -3'
miRNA:   3'- -CGUCG-CACCA-CGUC----------GAC----CGGUUGUUG- -5'
367 3' -55.7 AC_000011.1 + 24314 0.66 0.547055
Target:  5'- gGCAagccCGUGGUcagcgacgaGCAGCUGGcCCggUGGCu -3'
miRNA:   3'- -CGUc---GCACCA---------CGUCGACC-GGuuGUUG- -5'
367 3' -55.7 AC_000011.1 + 3693 0.66 0.535877
Target:  5'- cCAGCGccGUGC-GCggaaUGGCCAugGGCg -3'
miRNA:   3'- cGUCGCacCACGuCG----ACCGGUugUUG- -5'
367 3' -55.7 AC_000011.1 + 33871 0.66 0.502857
Target:  5'- aGCGGCGgcg-GCAGCgacugcugcggGGCCugauGCGACa -3'
miRNA:   3'- -CGUCGCaccaCGUCGa----------CCGGu---UGUUG- -5'
367 3' -55.7 AC_000011.1 + 9995 0.67 0.460287
Target:  5'- -uGGUGUaGGaGCAGUUGGCCAugAc- -3'
miRNA:   3'- cgUCGCA-CCaCGUCGACCGGUugUug -5'
367 3' -55.7 AC_000011.1 + 14847 0.67 0.449943
Target:  5'- cGCAGCaGUG--GCAGC-GGCCGagGCGGCu -3'
miRNA:   3'- -CGUCG-CACcaCGUCGaCCGGU--UGUUG- -5'
367 3' -55.7 AC_000011.1 + 33906 0.67 0.439728
Target:  5'- uCAGuCGUcuGGUGCGGCgGGCgCAGCGcGCa -3'
miRNA:   3'- cGUC-GCA--CCACGUCGaCCG-GUUGU-UG- -5'
367 3' -55.7 AC_000011.1 + 22391 0.68 0.4099
Target:  5'- aGCAGCGcGcGUcGUuGUUGGCCAGCuGCa -3'
miRNA:   3'- -CGUCGCaC-CA-CGuCGACCGGUUGuUG- -5'
367 3' -55.7 AC_000011.1 + 15051 0.68 0.4099
Target:  5'- uGCGGCGUGGaGCAagucuacuggucGCUGcCCGACAu- -3'
miRNA:   3'- -CGUCGCACCaCGU------------CGACcGGUUGUug -5'
367 3' -55.7 AC_000011.1 + 11541 0.68 0.400241
Target:  5'- aGCAuCGUGGUGCAGgaGcGCgGGCuGCc -3'
miRNA:   3'- -CGUcGCACCACGUCgaC-CGgUUGuUG- -5'
367 3' -55.7 AC_000011.1 + 13915 0.68 0.381363
Target:  5'- -gAGCGUGaUGCAGCaGGCgAugGCGGCg -3'
miRNA:   3'- cgUCGCACcACGUCGaCCGgU--UGUUG- -5'
367 3' -55.7 AC_000011.1 + 15733 0.69 0.36309
Target:  5'- gGCGGCGggGGUGUAGUUGcGCgCGuCGGCc -3'
miRNA:   3'- -CGUCGCa-CCACGUCGAC-CG-GUuGUUG- -5'
367 3' -55.7 AC_000011.1 + 11425 0.7 0.320119
Target:  5'- cGCAGCuguuccugGUGGUGCAGCauaGUCGggACAACg -3'
miRNA:   3'- -CGUCG--------CACCACGUCGac-CGGU--UGUUG- -5'
367 3' -55.7 AC_000011.1 + 17728 0.7 0.320119
Target:  5'- aCGGgGUGGUGgAcCUGGCCAaccaggccguGCAGCg -3'
miRNA:   3'- cGUCgCACCACgUcGACCGGU----------UGUUG- -5'
367 3' -55.7 AC_000011.1 + 25040 0.7 0.311996
Target:  5'- aGCGGCGggGGgcacucGCGGaaGGUCAGCGGCa -3'
miRNA:   3'- -CGUCGCa-CCa-----CGUCgaCCGGUUGUUG- -5'
367 3' -55.7 AC_000011.1 + 34545 0.7 0.28857
Target:  5'- aCAGCGUGGUaagGgGGCcGGCCGAUAc- -3'
miRNA:   3'- cGUCGCACCA---CgUCGaCCGGUUGUug -5'
367 3' -55.7 AC_000011.1 + 24995 0.72 0.214467
Target:  5'- gGCAGCGcGGaGCAGgUGGCgGGCAGg -3'
miRNA:   3'- -CGUCGCaCCaCGUCgACCGgUUGUUg -5'
367 3' -55.7 AC_000011.1 + 3717 0.74 0.166554
Target:  5'- aGCAGCuGcGGcgGCAGCUGcGuCCAACGACg -3'
miRNA:   3'- -CGUCG-CaCCa-CGUCGAC-C-GGUUGUUG- -5'
367 3' -55.7 AC_000011.1 + 17069 0.75 0.14851
Target:  5'- uGCAGCGgcGGUGCGGCgacGG-CGGCGGCg -3'
miRNA:   3'- -CGUCGCa-CCACGUCGa--CCgGUUGUUG- -5'
367 3' -55.7 AC_000011.1 + 24015 0.77 0.101539
Target:  5'- uCGGCGcgGGUGCGGUUGGCgCGGCAGg -3'
miRNA:   3'- cGUCGCa-CCACGUCGACCG-GUUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.