miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3671 3' -71.2 NC_001650.1 + 93339 0.66 0.339475
Target:  5'- -aGCaGcGGGGCCaguacgagcaccugaCGGGGGCGGCcuuuGGGGc -3'
miRNA:   3'- gcCGcC-CCCUGG---------------GCCCCCGCCG----CCCC- -5'
3671 3' -71.2 NC_001650.1 + 6990 0.66 0.339475
Target:  5'- uGGCccaaugggggauaagGGGGGACCUGGGuugccaGGCaGacuaGGGGg -3'
miRNA:   3'- gCCG---------------CCCCCUGGGCCC------CCGcCg---CCCC- -5'
3671 3' -71.2 NC_001650.1 + 173697 0.66 0.339475
Target:  5'- uGGCccaaugggggauaagGGGGGACCUGGGuugccaGGCaGacuaGGGGg -3'
miRNA:   3'- gCCG---------------CCCCCUGGGCCC------CCGcCg---CCCC- -5'
3671 3' -71.2 NC_001650.1 + 132165 0.66 0.337468
Target:  5'- cCGGCGGGGcGGagaaggugcccgugaCCGGGuucgaGGUGGCcguGGGGu -3'
miRNA:   3'- -GCCGCCCC-CUg--------------GGCCC-----CCGCCG---CCCC- -5'
3671 3' -71.2 NC_001650.1 + 169810 0.66 0.336801
Target:  5'- gGGCcaauaGGGuGGGCuaGGGGGUGGgcauaUGGGGu -3'
miRNA:   3'- gCCG-----CCC-CCUGggCCCCCGCC-----GCCCC- -5'
3671 3' -71.2 NC_001650.1 + 143100 0.66 0.336801
Target:  5'- cCGGCuGcacGGGCCgGGGcGGCGGCGGc- -3'
miRNA:   3'- -GCCGcCc--CCUGGgCCC-CCGCCGCCcc -5'
3671 3' -71.2 NC_001650.1 + 3103 0.66 0.336801
Target:  5'- gGGCcaauaGGGuGGGCuaGGGGGUGGgcauaUGGGGu -3'
miRNA:   3'- gCCG-----CCC-CCUGggCCCCCGCC-----GCCCC- -5'
3671 3' -71.2 NC_001650.1 + 134551 0.66 0.336801
Target:  5'- gGGCGuGuGGGACaCGGaGGGCccCGGGGg -3'
miRNA:   3'- gCCGC-C-CCCUGgGCC-CCCGccGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 121010 0.66 0.336135
Target:  5'- gGGCaGGGaGACCUcgGGGGGCGcgguccaGUGGGc -3'
miRNA:   3'- gCCGcCCC-CUGGG--CCCCCGC-------CGCCCc -5'
3671 3' -71.2 NC_001650.1 + 148843 0.66 0.334806
Target:  5'- -uGCGGGGuccggcgcgugcgaGcGCCUGGGGGaggguGGUGGGGg -3'
miRNA:   3'- gcCGCCCC--------------C-UGGGCCCCCg----CCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 69065 0.67 0.330183
Target:  5'- uGGCGGccauGGGCCCGGGcGcGCGGCa--- -3'
miRNA:   3'- gCCGCCc---CCUGGGCCC-C-CGCCGcccc -5'
3671 3' -71.2 NC_001650.1 + 167794 0.67 0.330183
Target:  5'- --aUGGGGGGCC-GGGGGUGGgGuauGGGu -3'
miRNA:   3'- gccGCCCCCUGGgCCCCCGCCgC---CCC- -5'
3671 3' -71.2 NC_001650.1 + 1087 0.67 0.330183
Target:  5'- --aUGGGGGGCC-GGGGGUGGgGuauGGGu -3'
miRNA:   3'- gccGCCCCCUGGgCCCCCGCCgC---CCC- -5'
3671 3' -71.2 NC_001650.1 + 38296 0.67 0.323661
Target:  5'- -aGCGGGGucCCCGuGGccaaacGGCGGUGuGGGg -3'
miRNA:   3'- gcCGCCCCcuGGGC-CC------CCGCCGC-CCC- -5'
3671 3' -71.2 NC_001650.1 + 136808 0.67 0.321724
Target:  5'- gCGGUGGGcuggguuugucuucGGGCCUGGGGcugguGCGGCGauGGa -3'
miRNA:   3'- -GCCGCCC--------------CCUGGGCCCC-----CGCCGCc-CC- -5'
3671 3' -71.2 NC_001650.1 + 80690 0.67 0.317236
Target:  5'- uGGcCGGGGGcuacacggACCCGGGGaGCGaCGGc- -3'
miRNA:   3'- gCC-GCCCCC--------UGGGCCCC-CGCcGCCcc -5'
3671 3' -71.2 NC_001650.1 + 126187 0.67 0.317236
Target:  5'- uGGaaaaaaaGGGaGGAaCCGcggcGGGGCGGCGGGc -3'
miRNA:   3'- gCCg------CCC-CCUgGGC----CCCCGCCGCCCc -5'
3671 3' -71.2 NC_001650.1 + 132319 0.67 0.317236
Target:  5'- cCGGUGGGcGGCCCGuaGGGGUa--GGGGg -3'
miRNA:   3'- -GCCGCCCcCUGGGC--CCCCGccgCCCC- -5'
3671 3' -71.2 NC_001650.1 + 39622 0.67 0.313427
Target:  5'- aGGCuGugauggaugacaGGGACCCGGGccaGGCgguagcucugcugagGGCGGGGu -3'
miRNA:   3'- gCCGcC------------CCCUGGGCCC---CCG---------------CCGCCCC- -5'
3671 3' -71.2 NC_001650.1 + 106110 0.67 0.310907
Target:  5'- gGGCGcucGGGCCUggccacaagGGGGGUGGUGGuGGa -3'
miRNA:   3'- gCCGCcc-CCUGGG---------CCCCCGCCGCC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.