miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3671 5' -56.5 NC_001650.1 + 175280 0.66 0.945168
Target:  5'- -cCCUCA-CACCcccacgCUCCCCCcuCGGc -3'
miRNA:   3'- gaGGAGUaGUGGua----GAGGGGGcuGCC- -5'
3671 5' -56.5 NC_001650.1 + 8573 0.66 0.945168
Target:  5'- -cCCUCA-CACCcccacgCUCCCCCcuCGGc -3'
miRNA:   3'- gaGGAGUaGUGGua----GAGGGGGcuGCC- -5'
3671 5' -56.5 NC_001650.1 + 22547 0.66 0.945168
Target:  5'- -gCCUC--CAUCAUCUCCCCCaa-GGc -3'
miRNA:   3'- gaGGAGuaGUGGUAGAGGGGGcugCC- -5'
3671 5' -56.5 NC_001650.1 + 13986 0.66 0.945168
Target:  5'- aCUCCUCuacCugCAUCUCCCCa----- -3'
miRNA:   3'- -GAGGAGua-GugGUAGAGGGGgcugcc -5'
3671 5' -56.5 NC_001650.1 + 125339 0.66 0.945168
Target:  5'- -cCCUCAUCGCCcUCUgCCUgGcuguuCGGg -3'
miRNA:   3'- gaGGAGUAGUGGuAGAgGGGgCu----GCC- -5'
3671 5' -56.5 NC_001650.1 + 180693 0.66 0.945168
Target:  5'- aCUCCUCuacCugCAUCUCCCCa----- -3'
miRNA:   3'- -GAGGAGua-GugGUAGAGGGGgcugcc -5'
3671 5' -56.5 NC_001650.1 + 107297 0.66 0.945168
Target:  5'- cCUCCUCGcccugccuguUCugCAgcaggUCCCCC-ACGGa -3'
miRNA:   3'- -GAGGAGU----------AGugGUag---AGGGGGcUGCC- -5'
3671 5' -56.5 NC_001650.1 + 96182 0.66 0.945168
Target:  5'- aCUCC-CAggACa--CUCCCCCGGgGGg -3'
miRNA:   3'- -GAGGaGUagUGguaGAGGGGGCUgCC- -5'
3671 5' -56.5 NC_001650.1 + 74509 0.66 0.945168
Target:  5'- -cCCUCcUCACCGUggugCCCCCGGuguuUGGc -3'
miRNA:   3'- gaGGAGuAGUGGUAga--GGGGGCU----GCC- -5'
3671 5' -56.5 NC_001650.1 + 128384 0.66 0.940759
Target:  5'- uUCCUCGcggcCACCGcCUCCCUCagcGCGGc -3'
miRNA:   3'- gAGGAGUa---GUGGUaGAGGGGGc--UGCC- -5'
3671 5' -56.5 NC_001650.1 + 70175 0.66 0.940759
Target:  5'- gCUCCauggCGUCACCcucgaGUCUCCUCUu-CGGg -3'
miRNA:   3'- -GAGGa---GUAGUGG-----UAGAGGGGGcuGCC- -5'
3671 5' -56.5 NC_001650.1 + 178099 0.66 0.936126
Target:  5'- uCUCCUC-UC-CCAucccUCUCCCCacACGGc -3'
miRNA:   3'- -GAGGAGuAGuGGU----AGAGGGGgcUGCC- -5'
3671 5' -56.5 NC_001650.1 + 11392 0.66 0.936126
Target:  5'- uCUCCUC-UC-CCAucccUCUCCCCacACGGc -3'
miRNA:   3'- -GAGGAGuAGuGGU----AGAGGGGgcUGCC- -5'
3671 5' -56.5 NC_001650.1 + 124584 0.66 0.936126
Target:  5'- gUCCUCGcUCAUgGgcgCgaCCCCCGGCGa -3'
miRNA:   3'- gAGGAGU-AGUGgUa--Ga-GGGGGCUGCc -5'
3671 5' -56.5 NC_001650.1 + 92649 0.66 0.936126
Target:  5'- uUCCUCuuu-UCGUCUCCaagCCCGACcGGg -3'
miRNA:   3'- gAGGAGuaguGGUAGAGG---GGGCUG-CC- -5'
3671 5' -56.5 NC_001650.1 + 165670 0.66 0.936126
Target:  5'- uUCCUCGggccgcUCGCCuuccucccCUCCCCgGGCaGGg -3'
miRNA:   3'- gAGGAGU------AGUGGua------GAGGGGgCUG-CC- -5'
3671 5' -56.5 NC_001650.1 + 11294 0.66 0.936126
Target:  5'- aCUCCUUAcCAUCGUUUCCCagagagCCG-CGGu -3'
miRNA:   3'- -GAGGAGUaGUGGUAGAGGG------GGCuGCC- -5'
3671 5' -56.5 NC_001650.1 + 178001 0.66 0.936126
Target:  5'- aCUCCUUAcCAUCGUUUCCCagagagCCG-CGGu -3'
miRNA:   3'- -GAGGAGUaGUGGUAGAGGG------GGCuGCC- -5'
3671 5' -56.5 NC_001650.1 + 100425 0.66 0.935651
Target:  5'- aUCCUcCAUCAgacccucCCAggggCCCCCgGACGGc -3'
miRNA:   3'- gAGGA-GUAGU-------GGUaga-GGGGG-CUGCC- -5'
3671 5' -56.5 NC_001650.1 + 114466 0.66 0.93127
Target:  5'- cCUCCUCAgagUCGCUgcaggacagGUCUCUCUCGA-GGu -3'
miRNA:   3'- -GAGGAGU---AGUGG---------UAGAGGGGGCUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.