miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3672 3' -58 NC_001650.1 + 16043 0.66 0.859034
Target:  5'- uACCUGgccaCCC-GCUUacccgcccaccuuaaAGGUGGCCCACc -3'
miRNA:   3'- -UGGACa---GGGuCGAGg--------------UCUAUCGGGUG- -5'
3672 3' -58 NC_001650.1 + 182750 0.66 0.859034
Target:  5'- uACCUGgccaCCC-GCUUacccgcccaccuuaaAGGUGGCCCACc -3'
miRNA:   3'- -UGGACa---GGGuCGAGg--------------UCUAUCGGGUG- -5'
3672 3' -58 NC_001650.1 + 92193 0.66 0.858274
Target:  5'- gGCCUGUUgaCCAcCUCCAcGGUuauccuuuGCCCGCg -3'
miRNA:   3'- -UGGACAG--GGUcGAGGU-CUAu-------CGGGUG- -5'
3672 3' -58 NC_001650.1 + 155386 0.66 0.858274
Target:  5'- aGCCUGUUCCcgaAGCUCUGGucggugaGGCCCc- -3'
miRNA:   3'- -UGGACAGGG---UCGAGGUCua-----UCGGGug -5'
3672 3' -58 NC_001650.1 + 49816 0.66 0.858274
Target:  5'- uACCUGUCCguGa-CCAGcaucgAGUCCACc -3'
miRNA:   3'- -UGGACAGGguCgaGGUCua---UCGGGUG- -5'
3672 3' -58 NC_001650.1 + 44773 0.66 0.853666
Target:  5'- uACCUGccaCCCGGCUCCcucaGGAUGGguuccguggugggcaCCCAg -3'
miRNA:   3'- -UGGACa--GGGUCGAGG----UCUAUC---------------GGGUg -5'
3672 3' -58 NC_001650.1 + 132162 0.66 0.850554
Target:  5'- -gCUGgCCCAGgaCCAcGUGGUCCACc -3'
miRNA:   3'- ugGACaGGGUCgaGGUcUAUCGGGUG- -5'
3672 3' -58 NC_001650.1 + 158515 0.66 0.842642
Target:  5'- uGCCUG-CCCAGCUCCAcccucAGCagGCu -3'
miRNA:   3'- -UGGACaGGGUCGAGGUcua--UCGggUG- -5'
3672 3' -58 NC_001650.1 + 59844 0.66 0.842642
Target:  5'- gACCcc-UCCAGCcUCAGGUGGCCCGa -3'
miRNA:   3'- -UGGacaGGGUCGaGGUCUAUCGGGUg -5'
3672 3' -58 NC_001650.1 + 140253 0.66 0.826262
Target:  5'- cCCUGggcucagCCCGGC-CCGGG-AGCuCCACc -3'
miRNA:   3'- uGGACa------GGGUCGaGGUCUaUCG-GGUG- -5'
3672 3' -58 NC_001650.1 + 114787 0.66 0.826262
Target:  5'- cACCUGUCCgagAGCUgCAGccUGGaCCCGCc -3'
miRNA:   3'- -UGGACAGGg--UCGAgGUCu-AUC-GGGUG- -5'
3672 3' -58 NC_001650.1 + 108658 0.66 0.826262
Target:  5'- cGCCUGUCCCccgaccugcacGGCcugCUGGAccUGGCCgCGCu -3'
miRNA:   3'- -UGGACAGGG-----------UCGa--GGUCU--AUCGG-GUG- -5'
3672 3' -58 NC_001650.1 + 30154 0.66 0.81781
Target:  5'- cCCUGUCCCucgAGCUCCAGcaccuccuccAGaacaCCCGCg -3'
miRNA:   3'- uGGACAGGG---UCGAGGUCua--------UC----GGGUG- -5'
3672 3' -58 NC_001650.1 + 27699 0.66 0.81781
Target:  5'- uACCUGcaguucgCCCAGCaCCAGAagAGCuCCAa -3'
miRNA:   3'- -UGGACa------GGGUCGaGGUCUa-UCG-GGUg -5'
3672 3' -58 NC_001650.1 + 155668 0.67 0.809192
Target:  5'- aGCCcGUCCCGGgacgaggCCGGuccucggGGCCCACc -3'
miRNA:   3'- -UGGaCAGGGUCga-----GGUCua-----UCGGGUG- -5'
3672 3' -58 NC_001650.1 + 155960 0.67 0.791493
Target:  5'- uGCCUG-CCCGGCUgCAccgAGCCCc- -3'
miRNA:   3'- -UGGACaGGGUCGAgGUcuaUCGGGug -5'
3672 3' -58 NC_001650.1 + 26650 0.67 0.791493
Target:  5'- gGCCUGggugCCCAcguucucCUCCAcggGGCCCGCg -3'
miRNA:   3'- -UGGACa---GGGUc------GAGGUcuaUCGGGUG- -5'
3672 3' -58 NC_001650.1 + 89723 0.67 0.782429
Target:  5'- gACCaGgaacaCCCGGCUCUugucGAUggcGGCCCACg -3'
miRNA:   3'- -UGGaCa----GGGUCGAGGu---CUA---UCGGGUG- -5'
3672 3' -58 NC_001650.1 + 138393 0.67 0.773233
Target:  5'- aGCCUGcCCCAcauGCUCCAcg-AGCUCAg -3'
miRNA:   3'- -UGGACaGGGU---CGAGGUcuaUCGGGUg -5'
3672 3' -58 NC_001650.1 + 157499 0.67 0.773233
Target:  5'- aACCUGUUcaCCAGCUCCcGGaGGUCCu- -3'
miRNA:   3'- -UGGACAG--GGUCGAGGuCUaUCGGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.