miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3672 3' -58 NC_001650.1 + 158515 0.66 0.842642
Target:  5'- uGCCUG-CCCAGCUCCAcccucAGCagGCu -3'
miRNA:   3'- -UGGACaGGGUCGAGGUcua--UCGggUG- -5'
3672 3' -58 NC_001650.1 + 158103 0.68 0.744941
Target:  5'- cACCUGcCCCuGCagCUGGGgcUGGCCCAUg -3'
miRNA:   3'- -UGGACaGGGuCGa-GGUCU--AUCGGGUG- -5'
3672 3' -58 NC_001650.1 + 158635 0.68 0.758267
Target:  5'- gACCUGUCCCccccucccuccaggcGGCuacgggggUCCAGGUGGCUaACc -3'
miRNA:   3'- -UGGACAGGG---------------UCG--------AGGUCUAUCGGgUG- -5'
3672 3' -58 NC_001650.1 + 157499 0.67 0.773233
Target:  5'- aACCUGUUcaCCAGCUCCcGGaGGUCCu- -3'
miRNA:   3'- -UGGACAG--GGUCGAGGuCUaUCGGGug -5'
3672 3' -58 NC_001650.1 + 155668 0.67 0.809192
Target:  5'- aGCCcGUCCCGGgacgaggCCGGuccucggGGCCCACc -3'
miRNA:   3'- -UGGaCAGGGUCga-----GGUCua-----UCGGGUG- -5'
3672 3' -58 NC_001650.1 + 27699 0.66 0.81781
Target:  5'- uACCUGcaguucgCCCAGCaCCAGAagAGCuCCAa -3'
miRNA:   3'- -UGGACa------GGGUCGaGGUCUa-UCG-GGUg -5'
3672 3' -58 NC_001650.1 + 30154 0.66 0.81781
Target:  5'- cCCUGUCCCucgAGCUCCAGcaccuccuccAGaacaCCCGCg -3'
miRNA:   3'- uGGACAGGG---UCGAGGUCua--------UC----GGGUG- -5'
3672 3' -58 NC_001650.1 + 108658 0.66 0.826262
Target:  5'- cGCCUGUCCCccgaccugcacGGCcugCUGGAccUGGCCgCGCu -3'
miRNA:   3'- -UGGACAGGG-----------UCGa--GGUCU--AUCGG-GUG- -5'
3672 3' -58 NC_001650.1 + 140253 0.66 0.826262
Target:  5'- cCCUGggcucagCCCGGC-CCGGG-AGCuCCACc -3'
miRNA:   3'- uGGACa------GGGUCGaGGUCUaUCG-GGUG- -5'
3672 3' -58 NC_001650.1 + 138715 0.68 0.73917
Target:  5'- cCCUGUCuCCAGCauggccccugucugCCAGcAUGGCCCc- -3'
miRNA:   3'- uGGACAG-GGUCGa-------------GGUC-UAUCGGGug -5'
3672 3' -58 NC_001650.1 + 27462 0.69 0.675957
Target:  5'- uACCUGgCCCGGgUCCAGAagcaGGCCUcCa -3'
miRNA:   3'- -UGGACaGGGUCgAGGUCUa---UCGGGuG- -5'
3672 3' -58 NC_001650.1 + 73273 0.69 0.665893
Target:  5'- aGCCUGggCUaCAGCUCCAuccuGGU-GCCCGCg -3'
miRNA:   3'- -UGGACa-GG-GUCGAGGU----CUAuCGGGUG- -5'
3672 3' -58 NC_001650.1 + 135023 0.73 0.450324
Target:  5'- gACCUGUCCCuucuCUCCAGGgcGgCCACc -3'
miRNA:   3'- -UGGACAGGGuc--GAGGUCUauCgGGUG- -5'
3672 3' -58 NC_001650.1 + 118103 0.72 0.525641
Target:  5'- aACUUGUCCCcguacAGCcccgCCAGGU-GCCCGCc -3'
miRNA:   3'- -UGGACAGGG-----UCGa---GGUCUAuCGGGUG- -5'
3672 3' -58 NC_001650.1 + 22029 0.71 0.54524
Target:  5'- uGCCcGUCCCGGC-CC---UGGCCCACc -3'
miRNA:   3'- -UGGaCAGGGUCGaGGucuAUCGGGUG- -5'
3672 3' -58 NC_001650.1 + 120100 0.71 0.555129
Target:  5'- cCCUG-CCCAGCUCCgacgcccugaAGGU-GCCCAg -3'
miRNA:   3'- uGGACaGGGUCGAGG----------UCUAuCGGGUg -5'
3672 3' -58 NC_001650.1 + 39563 0.71 0.562082
Target:  5'- gACCgUGUgcgcgcgagaugcgCCCAGgCUCCAcgcGGUGGCCCACc -3'
miRNA:   3'- -UGG-ACA--------------GGGUC-GAGGU---CUAUCGGGUG- -5'
3672 3' -58 NC_001650.1 + 78946 0.7 0.604217
Target:  5'- uACCUGUCCCuccugggGGCg-CAGAUGcCCCGCg -3'
miRNA:   3'- -UGGACAGGG-------UCGagGUCUAUcGGGUG- -5'
3672 3' -58 NC_001650.1 + 49043 0.7 0.615332
Target:  5'- cGCCaa--CCAGCUCCAcGUGGCCUGCa -3'
miRNA:   3'- -UGGacagGGUCGAGGUcUAUCGGGUG- -5'
3672 3' -58 NC_001650.1 + 127936 0.7 0.625449
Target:  5'- uCCUGUCCCAcguGCUCaccaaggugaaCAGGUGccuGCCCGCc -3'
miRNA:   3'- uGGACAGGGU---CGAG-----------GUCUAU---CGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.