miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3672 5' -63.1 NC_001650.1 + 89154 0.66 0.654667
Target:  5'- cGGCGGGaggcCCUcgaagucgCGCGUGGUccUGGccAGCAGg -3'
miRNA:   3'- aCCGCCU----GGA--------GCGCGCCG--ACC--UCGUC- -5'
3672 5' -63.1 NC_001650.1 + 54912 0.66 0.654667
Target:  5'- cGGCucgcGGCCUCGCucggGCGGCcGGgggauuuuuGGCAGg -3'
miRNA:   3'- aCCGc---CUGGAGCG----CGCCGaCC---------UCGUC- -5'
3672 5' -63.1 NC_001650.1 + 129005 0.66 0.654667
Target:  5'- aGGCaGGCCUUcgaggGCGCGGgc-GAGCAGa -3'
miRNA:   3'- aCCGcCUGGAG-----CGCGCCgacCUCGUC- -5'
3672 5' -63.1 NC_001650.1 + 79102 0.66 0.654667
Target:  5'- gGGCGcGGCCgcucggCGgGCGGgaGGAGggcCAGu -3'
miRNA:   3'- aCCGC-CUGGa-----GCgCGCCgaCCUC---GUC- -5'
3672 5' -63.1 NC_001650.1 + 23740 0.66 0.64499
Target:  5'- -uGCGcGuCCUCGCgGCGcGCggGGGGCGGa -3'
miRNA:   3'- acCGC-CuGGAGCG-CGC-CGa-CCUCGUC- -5'
3672 5' -63.1 NC_001650.1 + 155860 0.66 0.64499
Target:  5'- gGGaCGGGCUgggggcguUCGCGgGGCUcgugGuGAGCGGg -3'
miRNA:   3'- aCC-GCCUGG--------AGCGCgCCGA----C-CUCGUC- -5'
3672 5' -63.1 NC_001650.1 + 121553 0.66 0.644021
Target:  5'- gUGGCaGGCCUCGCG-GGUgaggccgcacgcgUGGAagGCGGc -3'
miRNA:   3'- -ACCGcCUGGAGCGCgCCG-------------ACCU--CGUC- -5'
3672 5' -63.1 NC_001650.1 + 108205 0.66 0.635303
Target:  5'- cUGGCGcgugacGACCUCGagucCGCGGCcgUGGAcgagGCGGu -3'
miRNA:   3'- -ACCGC------CUGGAGC----GCGCCG--ACCU----CGUC- -5'
3672 5' -63.1 NC_001650.1 + 89384 0.66 0.635303
Target:  5'- cGG-GGAguuUCUCGCGCGGgUGGuGgAGa -3'
miRNA:   3'- aCCgCCU---GGAGCGCGCCgACCuCgUC- -5'
3672 5' -63.1 NC_001650.1 + 109203 0.66 0.634334
Target:  5'- gGGCGGcCCUucugcaCGUGCGacgccaaGCUGGGGCuGa -3'
miRNA:   3'- aCCGCCuGGA------GCGCGC-------CGACCUCGuC- -5'
3672 5' -63.1 NC_001650.1 + 22734 0.66 0.624644
Target:  5'- gGGCGGugCUguccaCGUGCcagagcaGGCUGGAGgGc -3'
miRNA:   3'- aCCGCCugGA-----GCGCG-------CCGACCUCgUc -5'
3672 5' -63.1 NC_001650.1 + 109758 0.66 0.615929
Target:  5'- aGGCGGACUUgGaGUGG-UGGAGgAGg -3'
miRNA:   3'- aCCGCCUGGAgCgCGCCgACCUCgUC- -5'
3672 5' -63.1 NC_001650.1 + 76842 0.66 0.615929
Target:  5'- cGGauaGGGCCgcCGCGCaGCUGGcgaucuGCAGc -3'
miRNA:   3'- aCCg--CCUGGa-GCGCGcCGACCu-----CGUC- -5'
3672 5' -63.1 NC_001650.1 + 121896 0.66 0.606255
Target:  5'- -cGCGGACUaCGCGCuGGaggUGGuGCAGa -3'
miRNA:   3'- acCGCCUGGaGCGCG-CCg--ACCuCGUC- -5'
3672 5' -63.1 NC_001650.1 + 111512 0.66 0.606255
Target:  5'- gGGUGGGCaagGCuGCGGCgggcacuguUGGGGCGGg -3'
miRNA:   3'- aCCGCCUGgagCG-CGCCG---------ACCUCGUC- -5'
3672 5' -63.1 NC_001650.1 + 35874 0.67 0.596598
Target:  5'- cGGgGGACCUggaguuucaCGCGgGGC-GG-GCGGa -3'
miRNA:   3'- aCCgCCUGGA---------GCGCgCCGaCCuCGUC- -5'
3672 5' -63.1 NC_001650.1 + 46183 0.67 0.596598
Target:  5'- cGGCcaAUCggCGCGCGGCUGaGAGgGGa -3'
miRNA:   3'- aCCGccUGGa-GCGCGCCGAC-CUCgUC- -5'
3672 5' -63.1 NC_001650.1 + 89208 0.67 0.596598
Target:  5'- aGGCGGGCCagggCGgGCGGC---GGCAa -3'
miRNA:   3'- aCCGCCUGGa---GCgCGCCGaccUCGUc -5'
3672 5' -63.1 NC_001650.1 + 115452 0.67 0.586004
Target:  5'- aGGCGGucaaggggGCCUCGCugaccuuucugcaGCGGCcGGGccuguGCAGg -3'
miRNA:   3'- aCCGCC--------UGGAGCG-------------CGCCGaCCU-----CGUC- -5'
3672 5' -63.1 NC_001650.1 + 122510 0.67 0.577361
Target:  5'- cGGCGGccaGCugCUCGCGCGccGCgGGGGCGu -3'
miRNA:   3'- aCCGCC---UG--GAGCGCGC--CGaCCUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.