miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
368 3' -54.6 AC_000011.1 + 15968 0.66 0.646317
Target:  5'- cCGCGCGUcUCCGGGUCcuGCCgGCGc-- -3'
miRNA:   3'- -GCGCGUAaGGGUCUAG--CGGgUGUucu -5'
368 3' -54.6 AC_000011.1 + 18082 0.66 0.612071
Target:  5'- cCGCGCGcgaCCCGGGggcacCGCCCGCc--- -3'
miRNA:   3'- -GCGCGUaa-GGGUCUa----GCGGGUGuucu -5'
368 3' -54.6 AC_000011.1 + 13879 0.67 0.589316
Target:  5'- gCGUGCGUaCCCGGAggGUCCuccucccucguACGAGAg -3'
miRNA:   3'- -GCGCGUAaGGGUCUagCGGG-----------UGUUCU- -5'
368 3' -54.6 AC_000011.1 + 15887 0.67 0.577991
Target:  5'- aCGCGCGgcUUCAGGcgccagCGCCgGCAGGAc -3'
miRNA:   3'- -GCGCGUaaGGGUCUa-----GCGGgUGUUCU- -5'
368 3' -54.6 AC_000011.1 + 13306 0.67 0.555497
Target:  5'- aCGCuGCug-UCCAcAUCGuCCCACAGGAa -3'
miRNA:   3'- -GCG-CGuaaGGGUcUAGC-GGGUGUUCU- -5'
368 3' -54.6 AC_000011.1 + 18145 0.69 0.458368
Target:  5'- gCGgGCGgugccCCCGGGUCGCgCGCGGGc -3'
miRNA:   3'- -GCgCGUaa---GGGUCUAGCGgGUGUUCu -5'
368 3' -54.6 AC_000011.1 + 14732 0.69 0.428016
Target:  5'- cCGCGC--UCCUGGAUgucgaCGCCUAUGAGAa -3'
miRNA:   3'- -GCGCGuaAGGGUCUA-----GCGGGUGUUCU- -5'
368 3' -54.6 AC_000011.1 + 21952 0.71 0.362076
Target:  5'- cCGCGCAgUUgCAGggCGCCCAgCAGGu -3'
miRNA:   3'- -GCGCGUaAGgGUCuaGCGGGU-GUUCu -5'
368 3' -54.6 AC_000011.1 + 15593 0.71 0.362076
Target:  5'- cCGCGC--UCCCuGGggCGCCCuCAAGGg -3'
miRNA:   3'- -GCGCGuaAGGG-UCuaGCGGGuGUUCU- -5'
368 3' -54.6 AC_000011.1 + 9425 0.71 0.33606
Target:  5'- cCGCGCAUcUCCAGGUgGCCgGgGGGGu -3'
miRNA:   3'- -GCGCGUAaGGGUCUAgCGGgUgUUCU- -5'
368 3' -54.6 AC_000011.1 + 30561 0.72 0.280769
Target:  5'- cCGcCGCAUUCCCAacgCGCaCCGCAAGc -3'
miRNA:   3'- -GC-GCGUAAGGGUcuaGCG-GGUGUUCu -5'
368 3' -54.6 AC_000011.1 + 11323 0.75 0.192174
Target:  5'- uGCGCA--CCCuGAUCGCgCGCGAGGa -3'
miRNA:   3'- gCGCGUaaGGGuCUAGCGgGUGUUCU- -5'
368 3' -54.6 AC_000011.1 + 22683 1.1 0.000568
Target:  5'- aCGCGCAUUCCCAGAUCGCCCACAAGAa -3'
miRNA:   3'- -GCGCGUAAGGGUCUAGCGGGUGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.