miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3680 3' -67 NC_001650.1 + 152880 0.66 0.477441
Target:  5'- -aGA-GGUCCC-GCCUGaCCCGCGCGu -3'
miRNA:   3'- cgCUcCCGGGGcCGGACgGGGUGCGU- -5'
3680 3' -67 NC_001650.1 + 24073 0.66 0.477441
Target:  5'- uGUGGGcGGCCCUGGCCgagaugGCCaUgGCGgGg -3'
miRNA:   3'- -CGCUC-CCGGGGCCGGa-----CGG-GgUGCgU- -5'
3680 3' -67 NC_001650.1 + 62628 0.66 0.477441
Target:  5'- cCGAGGGCgcugCCCuccGCC-GCCCC-CGCGg -3'
miRNA:   3'- cGCUCCCG----GGGc--CGGaCGGGGuGCGU- -5'
3680 3' -67 NC_001650.1 + 124482 0.66 0.477441
Target:  5'- cCGGGGGCCaCgGGCCccucgacGCCCC-UGUAg -3'
miRNA:   3'- cGCUCCCGG-GgCCGGa------CGGGGuGCGU- -5'
3680 3' -67 NC_001650.1 + 66555 0.66 0.477441
Target:  5'- cGUGAcGGGCCCCaGGUg-GUCCC-CGUAg -3'
miRNA:   3'- -CGCU-CCCGGGG-CCGgaCGGGGuGCGU- -5'
3680 3' -67 NC_001650.1 + 67433 0.66 0.477441
Target:  5'- aUGAGGaGCCCCGGUCU-CCagagCAUGCu -3'
miRNA:   3'- cGCUCC-CGGGGCCGGAcGGg---GUGCGu -5'
3680 3' -67 NC_001650.1 + 28536 0.66 0.477441
Target:  5'- cGUGGuGGGCCCCgaggaccuGGCCUcGUCCCGgGaCGg -3'
miRNA:   3'- -CGCU-CCCGGGG--------CCGGA-CGGGGUgC-GU- -5'
3680 3' -67 NC_001650.1 + 89881 0.66 0.475705
Target:  5'- gGCGAGagucccuggacgcGGCCCUGaGCCUcacccugaccgagGCCCCAgacccCGCGg -3'
miRNA:   3'- -CGCUC-------------CCGGGGC-CGGA-------------CGGGGU-----GCGU- -5'
3680 3' -67 NC_001650.1 + 122942 0.66 0.46879
Target:  5'- aCG-GGGUCCUGGCg-GaCCUCGCGCGg -3'
miRNA:   3'- cGCuCCCGGGGCCGgaC-GGGGUGCGU- -5'
3680 3' -67 NC_001650.1 + 153615 0.66 0.46879
Target:  5'- cCGAGGGCaCCuGCCUGCa-CACGUg -3'
miRNA:   3'- cGCUCCCGgGGcCGGACGggGUGCGu -5'
3680 3' -67 NC_001650.1 + 133457 0.66 0.46879
Target:  5'- aCGGGGGCCUCa-CCUcGCCCCGCu-- -3'
miRNA:   3'- cGCUCCCGGGGccGGA-CGGGGUGcgu -5'
3680 3' -67 NC_001650.1 + 163122 0.66 0.46879
Target:  5'- gGCGGGGGUCCaagcaucgguagCGGCCauucccGaCCCCGCGgGa -3'
miRNA:   3'- -CGCUCCCGGG------------GCCGGa-----C-GGGGUGCgU- -5'
3680 3' -67 NC_001650.1 + 108612 0.66 0.46621
Target:  5'- cGUGcAGGGCCugcucucugacaucCUGGCCgaccacccgGCCUCGCGCc -3'
miRNA:   3'- -CGC-UCCCGG--------------GGCCGGa--------CGGGGUGCGu -5'
3680 3' -67 NC_001650.1 + 42265 0.66 0.46022
Target:  5'- uCGAGGGCagaCgCGGCCgaggggguuUGCCCCccugcCGCGa -3'
miRNA:   3'- cGCUCCCGg--G-GCCGG---------ACGGGGu----GCGU- -5'
3680 3' -67 NC_001650.1 + 52721 0.66 0.46022
Target:  5'- -aGAGGGUCauGGCgaagaaggggUUGUCCCGCGCGg -3'
miRNA:   3'- cgCUCCCGGggCCG----------GACGGGGUGCGU- -5'
3680 3' -67 NC_001650.1 + 121873 0.66 0.46022
Target:  5'- uGCGAGGGgcucaaCCCCGGCgacGCggaCUACGCGc -3'
miRNA:   3'- -CGCUCCC------GGGGCCGga-CGg--GGUGCGU- -5'
3680 3' -67 NC_001650.1 + 134157 0.66 0.46022
Target:  5'- -aGGGGGCgaCCgcgggCGGCCcuCCCCACGCGa -3'
miRNA:   3'- cgCUCCCG--GG-----GCCGGacGGGGUGCGU- -5'
3680 3' -67 NC_001650.1 + 126363 0.66 0.46022
Target:  5'- cGCGcaGGCCCaguaCCUGCCCUACGUg -3'
miRNA:   3'- -CGCucCCGGGgcc-GGACGGGGUGCGu -5'
3680 3' -67 NC_001650.1 + 81574 0.66 0.451734
Target:  5'- gGCGAacuccaccaGGGCCUCGGggucGCCCgACGCGa -3'
miRNA:   3'- -CGCU---------CCCGGGGCCgga-CGGGgUGCGU- -5'
3680 3' -67 NC_001650.1 + 55077 0.66 0.451734
Target:  5'- -aGAGGGCcgccCCCGuGUCcucgGCCCCggGCGCGg -3'
miRNA:   3'- cgCUCCCG----GGGC-CGGa---CGGGG--UGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.