miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3680 3' -67 NC_001650.1 + 111530 0.66 0.451734
Target:  5'- gGCGAccgccugcccaGGGUCCCGGCgcgucUUGaCCCugGCGu -3'
miRNA:   3'- -CGCU-----------CCCGGGGCCG-----GACgGGGugCGU- -5'
3680 3' -67 NC_001650.1 + 81574 0.66 0.451734
Target:  5'- gGCGAacuccaccaGGGCCUCGGggucGCCCgACGCGa -3'
miRNA:   3'- -CGCU---------CCCGGGGCCgga-CGGGgUGCGU- -5'
3680 3' -67 NC_001650.1 + 9307 0.66 0.443334
Target:  5'- -gGAGGGCCuaGGCCaGUCCUACu-- -3'
miRNA:   3'- cgCUCCCGGggCCGGaCGGGGUGcgu -5'
3680 3' -67 NC_001650.1 + 176014 0.66 0.443334
Target:  5'- -gGAGGGCCuaGGCCaGUCCUACu-- -3'
miRNA:   3'- cgCUCCCGGggCCGGaCGGGGUGcgu -5'
3680 3' -67 NC_001650.1 + 143639 0.66 0.443334
Target:  5'- cGCGAGaGGCCCCGcaagacgcGCgaGC-CCGCGUc -3'
miRNA:   3'- -CGCUC-CCGGGGC--------CGgaCGgGGUGCGu -5'
3680 3' -67 NC_001650.1 + 106262 0.66 0.442499
Target:  5'- cGCGAcGGCCCCucgguGCCUcgcagccGCCCC-CGCu -3'
miRNA:   3'- -CGCUcCCGGGGc----CGGA-------CGGGGuGCGu -5'
3680 3' -67 NC_001650.1 + 117301 0.67 0.433371
Target:  5'- ---cGcGCCCCGGCCccaugcuccccgGCCCCAUGCu -3'
miRNA:   3'- cgcuCcCGGGGCCGGa-----------CGGGGUGCGu -5'
3680 3' -67 NC_001650.1 + 158734 0.67 0.426802
Target:  5'- aGCGAGGGCaaggugaaaCCCgGGUCUggagagcagcgGCCCCAC-CAc -3'
miRNA:   3'- -CGCUCCCG---------GGG-CCGGA-----------CGGGGUGcGU- -5'
3680 3' -67 NC_001650.1 + 50337 0.67 0.426802
Target:  5'- ----cGGCCCCGGCCUccucgaGCCCCGgGg- -3'
miRNA:   3'- cgcucCCGGGGCCGGA------CGGGGUgCgu -5'
3680 3' -67 NC_001650.1 + 24347 0.67 0.426802
Target:  5'- cCG-GGGCCCUauaaaaGGCCUGCCCgG-GCu -3'
miRNA:   3'- cGCuCCCGGGG------CCGGACGGGgUgCGu -5'
3680 3' -67 NC_001650.1 + 95507 0.67 0.426802
Target:  5'- cCGAGGaGCCCCcuCCcGCCCC-CGCu -3'
miRNA:   3'- cGCUCC-CGGGGccGGaCGGGGuGCGu -5'
3680 3' -67 NC_001650.1 + 68832 0.67 0.426802
Target:  5'- gGCGGGGcGCCUCGgacgggacguGCCgcGCCCCGgGCc -3'
miRNA:   3'- -CGCUCC-CGGGGC----------CGGa-CGGGGUgCGu -5'
3680 3' -67 NC_001650.1 + 18809 0.67 0.418675
Target:  5'- -aGAgGGGCCCUGGCUUGCUUuaaaauagaagUugGCAc -3'
miRNA:   3'- cgCU-CCCGGGGCCGGACGGG-----------GugCGU- -5'
3680 3' -67 NC_001650.1 + 11686 0.67 0.418675
Target:  5'- aUGGGGGCCUagggGGCCUG-CCCACu-- -3'
miRNA:   3'- cGCUCCCGGGg---CCGGACgGGGUGcgu -5'
3680 3' -67 NC_001650.1 + 42747 0.67 0.418675
Target:  5'- gGCGAGaGG-CCUGGCCUuugGUCCCucuCGCu -3'
miRNA:   3'- -CGCUC-CCgGGGCCGGA---CGGGGu--GCGu -5'
3680 3' -67 NC_001650.1 + 25058 0.67 0.418675
Target:  5'- aGCGAcguggccagcGGGCCCgccaUGGCCUaCCCCGC-CAa -3'
miRNA:   3'- -CGCU----------CCCGGG----GCCGGAcGGGGUGcGU- -5'
3680 3' -67 NC_001650.1 + 96265 0.67 0.418675
Target:  5'- cUGGGuGGCgaCCCGGUCcgGCCCCGcCGCu -3'
miRNA:   3'- cGCUC-CCG--GGGCCGGa-CGGGGU-GCGu -5'
3680 3' -67 NC_001650.1 + 178393 0.67 0.418675
Target:  5'- aUGGGGGCCUagggGGCCUG-CCCACu-- -3'
miRNA:   3'- cGCUCCCGGGg---CCGGACgGGGUGcgu -5'
3680 3' -67 NC_001650.1 + 111743 0.67 0.416255
Target:  5'- gGCGAGGGCCagGGCCaGguuguuaaaguccaCCCCAuccCGCAc -3'
miRNA:   3'- -CGCUCCCGGggCCGGaC--------------GGGGU---GCGU- -5'
3680 3' -67 NC_001650.1 + 111128 0.67 0.410642
Target:  5'- cGUGAGGGCgaagCCCGGguggauCCUGUUCUugGCc -3'
miRNA:   3'- -CGCUCCCG----GGGCC------GGACGGGGugCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.