miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3680 5' -55 NC_001650.1 + 123323 0.65 0.964687
Target:  5'- cCCUgaaGCUCAugAcGGGGCuccuggAGGUGCugGCCUc -3'
miRNA:   3'- -GGA---CGAGUugU-CCCCG------UUCAUG--CGGG- -5'
3680 5' -55 NC_001650.1 + 159272 0.65 0.964687
Target:  5'- cCCUggGCcCAGCAGGGcaGCAGGgACcCCCg -3'
miRNA:   3'- -GGA--CGaGUUGUCCC--CGUUCaUGcGGG- -5'
3680 5' -55 NC_001650.1 + 147082 0.65 0.964687
Target:  5'- aCCgucucgGCUaucuugaGACA-GGGCAGG-AUGCCCg -3'
miRNA:   3'- -GGa-----CGAg------UUGUcCCCGUUCaUGCGGG- -5'
3680 5' -55 NC_001650.1 + 72582 0.65 0.964687
Target:  5'- aCCUGCU--GCAGGccucGGaCGug-GCGCCCa -3'
miRNA:   3'- -GGACGAguUGUCC----CC-GUucaUGCGGG- -5'
3680 5' -55 NC_001650.1 + 38566 0.65 0.964687
Target:  5'- --cGCUCGggggACAuGGGGCuGGGggUGCCCu -3'
miRNA:   3'- ggaCGAGU----UGU-CCCCG-UUCauGCGGG- -5'
3680 5' -55 NC_001650.1 + 36479 0.65 0.96436
Target:  5'- aCCUGUUCAggcagggACcgGGGGGCAGGgccAgGCUg -3'
miRNA:   3'- -GGACGAGU-------UG--UCCCCGUUCa--UgCGGg -5'
3680 5' -55 NC_001650.1 + 132027 0.66 0.961325
Target:  5'- aCCUGCUCuacgcGCuGGccgcGGcCGAGUAC-CCCa -3'
miRNA:   3'- -GGACGAGu----UGuCC----CC-GUUCAUGcGGG- -5'
3680 5' -55 NC_001650.1 + 80207 0.66 0.961325
Target:  5'- cCCUGUUCAugaaGCccaAGGGacGCAGgacGUGCGCCg -3'
miRNA:   3'- -GGACGAGU----UG---UCCC--CGUU---CAUGCGGg -5'
3680 5' -55 NC_001650.1 + 59244 0.66 0.961325
Target:  5'- aCUGCgccuGCAGGGaCGAcUGCGUCCu -3'
miRNA:   3'- gGACGagu-UGUCCCcGUUcAUGCGGG- -5'
3680 5' -55 NC_001650.1 + 146133 0.66 0.961325
Target:  5'- gCCUGgUCcccgaagacgGACAGGGuGCcc--ACGCCCg -3'
miRNA:   3'- -GGACgAG----------UUGUCCC-CGuucaUGCGGG- -5'
3680 5' -55 NC_001650.1 + 133366 0.66 0.961325
Target:  5'- gCUGCgcCAGCAGaaaGGGCAGcucgcCGCCCu -3'
miRNA:   3'- gGACGa-GUUGUC---CCCGUUcau--GCGGG- -5'
3680 5' -55 NC_001650.1 + 155949 0.66 0.961325
Target:  5'- aCCUGUaguacagguUCAgaaACAcGGGGCAGGgggGCuGCCa -3'
miRNA:   3'- -GGACG---------AGU---UGU-CCCCGUUCa--UG-CGGg -5'
3680 5' -55 NC_001650.1 + 107529 0.66 0.960977
Target:  5'- uCCUGCacCAcgccgacaaggccACGGGGGUGcAGUG-GCCCa -3'
miRNA:   3'- -GGACGa-GU-------------UGUCCCCGU-UCAUgCGGG- -5'
3680 5' -55 NC_001650.1 + 57837 0.66 0.957748
Target:  5'- uCCggGCgguggCAGCGGcacguaGGGCAGGUACuggGCCUg -3'
miRNA:   3'- -GGa-CGa----GUUGUC------CCCGUUCAUG---CGGG- -5'
3680 5' -55 NC_001650.1 + 64373 0.66 0.957748
Target:  5'- cCCUGUUCAgggucuGCGGgcuGGGCGcGgacgccGCGCCCc -3'
miRNA:   3'- -GGACGAGU------UGUC---CCCGUuCa-----UGCGGG- -5'
3680 5' -55 NC_001650.1 + 71978 0.66 0.957748
Target:  5'- aUCUGC-CAGCAccuGGGCGGG-GCGgCCg -3'
miRNA:   3'- -GGACGaGUUGUc--CCCGUUCaUGCgGG- -5'
3680 5' -55 NC_001650.1 + 75421 0.66 0.957748
Target:  5'- aUCUaGCUCAGgGGggcGGGCGAGgaagcgaGCGCCg -3'
miRNA:   3'- -GGA-CGAGUUgUC---CCCGUUCa------UGCGGg -5'
3680 5' -55 NC_001650.1 + 121062 0.66 0.957748
Target:  5'- cCCUGCc---CGGGGacgccgcggcGCGGGggGCGCCCg -3'
miRNA:   3'- -GGACGaguuGUCCC----------CGUUCa-UGCGGG- -5'
3680 5' -55 NC_001650.1 + 21734 0.66 0.957748
Target:  5'- gCUGCUgGAacacuugaucaGGGGGCAgcaacAGcugcgGCGCCCc -3'
miRNA:   3'- gGACGAgUUg----------UCCCCGU-----UCa----UGCGGG- -5'
3680 5' -55 NC_001650.1 + 125488 0.66 0.957748
Target:  5'- --gGCgaggCGAUgucaggucgGGGGGCGaaAGUGCGCCa -3'
miRNA:   3'- ggaCGa---GUUG---------UCCCCGU--UCAUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.