miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3683 3' -55.9 NC_001650.1 + 74805 0.66 0.946281
Target:  5'- aGGugUGGGGGAgcc-GCaCgCACCG-GCc -3'
miRNA:   3'- -CCugACCCCCUacaaCG-G-GUGGUaCG- -5'
3683 3' -55.9 NC_001650.1 + 50296 0.66 0.946281
Target:  5'- gGGuCUGGGGGGc---GCCC-CCA-GCu -3'
miRNA:   3'- -CCuGACCCCCUacaaCGGGuGGUaCG- -5'
3683 3' -55.9 NC_001650.1 + 142599 0.66 0.946281
Target:  5'- --uCUGGGGGuccAUGcacgcGCCCGCCGUcaaGCa -3'
miRNA:   3'- ccuGACCCCC---UACaa---CGGGUGGUA---CG- -5'
3683 3' -55.9 NC_001650.1 + 35164 0.66 0.941856
Target:  5'- aGGCgccGcGGGGGUGgUGCCCcacACCA-GCa -3'
miRNA:   3'- cCUGa--C-CCCCUACaACGGG---UGGUaCG- -5'
3683 3' -55.9 NC_001650.1 + 58646 0.66 0.941856
Target:  5'- gGGGUUGGGGGGcagGUggugGUCCGCCcUGg -3'
miRNA:   3'- -CCUGACCCCCUa--CAa---CGGGUGGuACg -5'
3683 3' -55.9 NC_001650.1 + 102589 0.66 0.941856
Target:  5'- uGAC-GGGGGAgcugGCCCGCgCG-GCg -3'
miRNA:   3'- cCUGaCCCCCUacaaCGGGUG-GUaCG- -5'
3683 3' -55.9 NC_001650.1 + 24933 0.66 0.941856
Target:  5'- aGGACccugcGGGGGuccUGcUGCCCugCuggGCc -3'
miRNA:   3'- -CCUGa----CCCCCu--ACaACGGGugGua-CG- -5'
3683 3' -55.9 NC_001650.1 + 66628 0.66 0.937202
Target:  5'- gGGGCUGGcGGAcg-UGUUCGCCAaGCu -3'
miRNA:   3'- -CCUGACCcCCUacaACGGGUGGUaCG- -5'
3683 3' -55.9 NC_001650.1 + 103852 0.66 0.937202
Target:  5'- cGGGCUcgGuGGGGAUGgggaagGgCCGCCuggGCu -3'
miRNA:   3'- -CCUGA--C-CCCCUACaa----CgGGUGGua-CG- -5'
3683 3' -55.9 NC_001650.1 + 47849 0.66 0.932317
Target:  5'- gGGACcaugcuUGaGGGGGUGUuucugggcauagUGCUgACCAUGa -3'
miRNA:   3'- -CCUG------AC-CCCCUACA------------ACGGgUGGUACg -5'
3683 3' -55.9 NC_001650.1 + 39664 0.66 0.932317
Target:  5'- -uGCUgagGGcGGGGUGUUGCCUACa--GCa -3'
miRNA:   3'- ccUGA---CC-CCCUACAACGGGUGguaCG- -5'
3683 3' -55.9 NC_001650.1 + 24061 0.66 0.932317
Target:  5'- gGGAC-GGGGGccuGUGggcgGCCCuggccgagaugGCCAUGg -3'
miRNA:   3'- -CCUGaCCCCC---UACaa--CGGG-----------UGGUACg -5'
3683 3' -55.9 NC_001650.1 + 87109 0.66 0.9272
Target:  5'- gGGugUuGGGGGGga-UGCCCugCucgaGCa -3'
miRNA:   3'- -CCugA-CCCCCUacaACGGGugGua--CG- -5'
3683 3' -55.9 NC_001650.1 + 38320 0.66 0.9272
Target:  5'- cGGugUGGGGGGcugggcUGUacGCCC-UCGUGa -3'
miRNA:   3'- -CCugACCCCCU------ACAa-CGGGuGGUACg -5'
3683 3' -55.9 NC_001650.1 + 30562 0.66 0.9272
Target:  5'- ----aGGGGGAgagcgUGCUCuCCAUGCu -3'
miRNA:   3'- ccugaCCCCCUaca--ACGGGuGGUACG- -5'
3683 3' -55.9 NC_001650.1 + 30461 0.66 0.9272
Target:  5'- gGGGCggcucaGGGGGGUcucGCCCAUCccGCc -3'
miRNA:   3'- -CCUGa-----CCCCCUAcaaCGGGUGGuaCG- -5'
3683 3' -55.9 NC_001650.1 + 84777 0.66 0.926675
Target:  5'- gGGAguuuUUGaGGGcccacgcGGUGgccaagcUGCCCGCCAUGCg -3'
miRNA:   3'- -CCU----GAC-CCC-------CUACa------ACGGGUGGUACG- -5'
3683 3' -55.9 NC_001650.1 + 24346 0.66 0.921849
Target:  5'- aGGAggUGGGGGAggcGUggagGuCCCACUcgGUGCg -3'
miRNA:   3'- -CCUg-ACCCCCUa--CAa---C-GGGUGG--UACG- -5'
3683 3' -55.9 NC_001650.1 + 22725 0.66 0.921849
Target:  5'- cGGGCgGGaGGGcgGUgcUGUCCAC-GUGCc -3'
miRNA:   3'- -CCUGaCC-CCCuaCA--ACGGGUGgUACG- -5'
3683 3' -55.9 NC_001650.1 + 131414 0.67 0.916267
Target:  5'- uGGACaaccagugGGGGGAcauagcgGCCCAC-GUGCa -3'
miRNA:   3'- -CCUGa-------CCCCCUacaa---CGGGUGgUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.