miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3683 5' -62.8 NC_001650.1 + 101206 0.66 0.659434
Target:  5'- cGGCCCgcuUGUucaccuccGCCuccaGC-CCCCUGGCGa -3'
miRNA:   3'- aCCGGG---ACAuc------CGG----UGuGGGGACCGC- -5'
3683 5' -62.8 NC_001650.1 + 164878 0.66 0.659434
Target:  5'- aGGCCCUGacUAGagcgcgccgccGCCACcccACCCCccgGGCc -3'
miRNA:   3'- aCCGGGAC--AUC-----------CGGUG---UGGGGa--CCGc -5'
3683 5' -62.8 NC_001650.1 + 30663 0.66 0.659434
Target:  5'- aGGCaCCUGgGGGCggacgCGCGCgCCgcggGGCGa -3'
miRNA:   3'- aCCG-GGACaUCCG-----GUGUGgGGa---CCGC- -5'
3683 5' -62.8 NC_001650.1 + 155835 0.66 0.659434
Target:  5'- gGGUCUgGUAGugcaucuugaGCCACuCCCCgGGCGa -3'
miRNA:   3'- aCCGGGaCAUC----------CGGUGuGGGGaCCGC- -5'
3683 5' -62.8 NC_001650.1 + 162080 0.66 0.658463
Target:  5'- aGGCCgUUGaagGGGUugcggaucuuaauCGCGCCCCUGuGCGu -3'
miRNA:   3'- aCCGG-GACa--UCCG-------------GUGUGGGGAC-CGC- -5'
3683 5' -62.8 NC_001650.1 + 116965 0.66 0.649711
Target:  5'- --cCCCUGUAcugcuacgagcGGCCGCGCCUcucgCUGGCc -3'
miRNA:   3'- accGGGACAU-----------CCGGUGUGGG----GACCGc -5'
3683 5' -62.8 NC_001650.1 + 5205 0.66 0.649711
Target:  5'- gGGCCCUGccAGGCauggggaACucuCCCCauUGGCu -3'
miRNA:   3'- aCCGGGACa-UCCGg------UGu--GGGG--ACCGc -5'
3683 5' -62.8 NC_001650.1 + 5684 0.66 0.649711
Target:  5'- uUGGCCCucUGUGGGUguaauCACCCggGGCc -3'
miRNA:   3'- -ACCGGG--ACAUCCGgu---GUGGGgaCCGc -5'
3683 5' -62.8 NC_001650.1 + 172391 0.66 0.649711
Target:  5'- uUGGCCCucUGUGGGUguaauCACCCggGGCc -3'
miRNA:   3'- -ACCGGG--ACAUCCGgu---GUGGGgaCCGc -5'
3683 5' -62.8 NC_001650.1 + 120165 0.66 0.649711
Target:  5'- aGGuCCCUGgcGagcuucucGCCAgaguCGCCCCUGGgCGu -3'
miRNA:   3'- aCC-GGGACauC--------CGGU----GUGGGGACC-GC- -5'
3683 5' -62.8 NC_001650.1 + 41443 0.66 0.649711
Target:  5'- gGGCCC----GGCCGC-CgCCCUGGgGa -3'
miRNA:   3'- aCCGGGacauCCGGUGuG-GGGACCgC- -5'
3683 5' -62.8 NC_001650.1 + 52790 0.66 0.649711
Target:  5'- -cGCCCUgcacGUGGGCCGCuauguCCCCccacUGGUu -3'
miRNA:   3'- acCGGGA----CAUCCGGUGu----GGGG----ACCGc -5'
3683 5' -62.8 NC_001650.1 + 171912 0.66 0.649711
Target:  5'- gGGCCCUGccAGGCauggggaACucuCCCCauUGGCu -3'
miRNA:   3'- aCCGGGACa-UCCGg------UGu--GGGG--ACCGc -5'
3683 5' -62.8 NC_001650.1 + 127369 0.66 0.649711
Target:  5'- uUGGCCaaUGUAGGCCcaGCAaggguCUCCcGGCGu -3'
miRNA:   3'- -ACCGGg-ACAUCCGG--UGU-----GGGGaCCGC- -5'
3683 5' -62.8 NC_001650.1 + 111513 0.66 0.649711
Target:  5'- uUGGCCCUcucGUGGGUgGCgACCgCCUgcccagggucccGGCGc -3'
miRNA:   3'- -ACCGGGA---CAUCCGgUG-UGG-GGA------------CCGC- -5'
3683 5' -62.8 NC_001650.1 + 390 0.66 0.648737
Target:  5'- gGGCCCgGUccaaauaAGGUCAguCGCCCCUuGCa -3'
miRNA:   3'- aCCGGGaCA-------UCCGGU--GUGGGGAcCGc -5'
3683 5' -62.8 NC_001650.1 + 167097 0.66 0.648737
Target:  5'- gGGCCCgGUccaaauaAGGUCAguCGCCCCUuGCa -3'
miRNA:   3'- aCCGGGaCA-------UCCGGU--GUGGGGAcCGc -5'
3683 5' -62.8 NC_001650.1 + 161568 0.66 0.647764
Target:  5'- cGGCCgCUGUcgugcgAGGCguaCGCGCCCCccgcgcgcugggGGCGc -3'
miRNA:   3'- aCCGG-GACA------UCCG---GUGUGGGGa-----------CCGC- -5'
3683 5' -62.8 NC_001650.1 + 105563 0.66 0.639974
Target:  5'- aGGCCgUGgcGGUCcaggaACGCCUCgGGCa -3'
miRNA:   3'- aCCGGgACauCCGG-----UGUGGGGaCCGc -5'
3683 5' -62.8 NC_001650.1 + 322 0.66 0.639974
Target:  5'- cGGCCaucuugGUGGGCgAcCACCUCgggGGUGg -3'
miRNA:   3'- aCCGGga----CAUCCGgU-GUGGGGa--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.