miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3683 5' -62.8 NC_001650.1 + 281 0.69 0.452017
Target:  5'- -cGUCagacagAGGCCACAacCCCCUGGCGg -3'
miRNA:   3'- acCGGgaca--UCCGGUGU--GGGGACCGC- -5'
3683 5' -62.8 NC_001650.1 + 322 0.66 0.639974
Target:  5'- cGGCCaucuugGUGGGCgAcCACCUCgggGGUGg -3'
miRNA:   3'- aCCGGga----CAUCCGgU-GUGGGGa--CCGC- -5'
3683 5' -62.8 NC_001650.1 + 390 0.66 0.648737
Target:  5'- gGGCCCgGUccaaauaAGGUCAguCGCCCCUuGCa -3'
miRNA:   3'- aCCGGGaCA-------UCCGGU--GUGGGGAcCGc -5'
3683 5' -62.8 NC_001650.1 + 3085 0.67 0.601041
Target:  5'- uUGGCuauCCUuacauagggAGGCCAUauuggauucugGCCCCUGGCa -3'
miRNA:   3'- -ACCG---GGAca-------UCCGGUG-----------UGGGGACCGc -5'
3683 5' -62.8 NC_001650.1 + 5205 0.66 0.649711
Target:  5'- gGGCCCUGccAGGCauggggaACucuCCCCauUGGCu -3'
miRNA:   3'- aCCGGGACa-UCCGg------UGu--GGGG--ACCGc -5'
3683 5' -62.8 NC_001650.1 + 5684 0.66 0.649711
Target:  5'- uUGGCCCucUGUGGGUguaauCACCCggGGCc -3'
miRNA:   3'- -ACCGGG--ACAUCCGgu---GUGGGgaCCGc -5'
3683 5' -62.8 NC_001650.1 + 10245 0.66 0.609786
Target:  5'- cGGCCCaaUGgGGGCUacccacuGCACCCUcGGCc -3'
miRNA:   3'- aCCGGG--ACaUCCGG-------UGUGGGGaCCGc -5'
3683 5' -62.8 NC_001650.1 + 13341 0.67 0.579743
Target:  5'- gGGCCCguccaaugggAGGCCGgggACCCCUGGa- -3'
miRNA:   3'- aCCGGGaca-------UCCGGUg--UGGGGACCgc -5'
3683 5' -62.8 NC_001650.1 + 16903 0.66 0.630232
Target:  5'- gGGCCCggggGaGGGCgGCAgCCC-GGCc -3'
miRNA:   3'- aCCGGGa---CaUCCGgUGUgGGGaCCGc -5'
3683 5' -62.8 NC_001650.1 + 18470 0.7 0.417864
Target:  5'- aGGCCCcccUAGGCCuaagagcCGCCCCgGGCc -3'
miRNA:   3'- aCCGGGac-AUCCGGu------GUGGGGaCCGc -5'
3683 5' -62.8 NC_001650.1 + 22038 0.73 0.279005
Target:  5'- cGGCCCU---GGCC-CACCCCaaGGCGg -3'
miRNA:   3'- aCCGGGAcauCCGGuGUGGGGa-CCGC- -5'
3683 5' -62.8 NC_001650.1 + 24079 0.68 0.48764
Target:  5'- cGGCCCUGgccgagauGGCCAUGgcggggaugaggUCCCUGGaCGu -3'
miRNA:   3'- aCCGGGACau------CCGGUGU------------GGGGACC-GC- -5'
3683 5' -62.8 NC_001650.1 + 24954 0.69 0.452017
Target:  5'- -uGCCCUGcUGGGCCcaggGCACCcaCCUGGgGu -3'
miRNA:   3'- acCGGGAC-AUCCGG----UGUGG--GGACCgC- -5'
3683 5' -62.8 NC_001650.1 + 25966 0.71 0.37746
Target:  5'- aGGCCUccacGGCCGCcagcCCCCUGGUGa -3'
miRNA:   3'- aCCGGGacauCCGGUGu---GGGGACCGC- -5'
3683 5' -62.8 NC_001650.1 + 26951 0.66 0.620492
Target:  5'- aGGCgCa-UGGGCUACAgCCCCgagggGGCGg -3'
miRNA:   3'- aCCGgGacAUCCGGUGU-GGGGa----CCGC- -5'
3683 5' -62.8 NC_001650.1 + 27613 0.67 0.60007
Target:  5'- cGGCCCUcucGGGCagcaacuacucgcUGCACCaCCUGGCc -3'
miRNA:   3'- aCCGGGAca-UCCG-------------GUGUGG-GGACCGc -5'
3683 5' -62.8 NC_001650.1 + 28457 0.68 0.514274
Target:  5'- cGGCCgugCUGUGccugcccGGCUGCaccgaGCCCCUGGCc -3'
miRNA:   3'- aCCGG---GACAU-------CCGGUG-----UGGGGACCGc -5'
3683 5' -62.8 NC_001650.1 + 29169 0.69 0.461674
Target:  5'- cUGGgCCUGcucugcgaccccucGGCCGCcuaccACCCCUGGCa -3'
miRNA:   3'- -ACCgGGACau------------CCGGUG-----UGGGGACCGc -5'
3683 5' -62.8 NC_001650.1 + 29381 0.67 0.547172
Target:  5'- aGG-CCUGUGGGCCGaggcuauauauaaaGCCCCgcgGGgGa -3'
miRNA:   3'- aCCgGGACAUCCGGUg-------------UGGGGa--CCgC- -5'
3683 5' -62.8 NC_001650.1 + 30196 0.66 0.639
Target:  5'- aGGCCCUGgGGGuCCugACggaCCUccucucgGGCGa -3'
miRNA:   3'- aCCGGGACaUCC-GGugUGg--GGA-------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.