miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3684 3' -55.8 NC_001650.1 + 121589 0.66 0.920952
Target:  5'- gCGGGGgcGGCGGAGGgCaGCGcccucggguGGCCCGu -3'
miRNA:   3'- -GUCUCuaCCGUUUCCgG-CGC---------UUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 106846 0.66 0.920952
Target:  5'- gCAGGGGUgGGCGcuGGGGUCG--GGCCCGg -3'
miRNA:   3'- -GUCUCUA-CCGU--UUCCGGCgcUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 77947 0.66 0.920952
Target:  5'- gCGGGGgcGGCugcgaggcaccgAGGGGCCGuCGcGCCCa -3'
miRNA:   3'- -GUCUCuaCCG------------UUUCCGGC-GCuUGGGc -5'
3684 3' -55.8 NC_001650.1 + 29152 0.66 0.920952
Target:  5'- cCAGGGAcGGCAGgcaccuGGGCCugcucuGCGAcCCCu -3'
miRNA:   3'- -GUCUCUaCCGUU------UCCGG------CGCUuGGGc -5'
3684 3' -55.8 NC_001650.1 + 58956 0.66 0.920952
Target:  5'- gGGAGgcGGCGgcGGCUucuggcaCGGGCCCGg -3'
miRNA:   3'- gUCUCuaCCGUuuCCGGc------GCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 87557 0.66 0.920397
Target:  5'- gCAGGGAaagcccaGGCccggaaaGGAGGCCGCGAuggGCaCCGu -3'
miRNA:   3'- -GUCUCUa------CCG-------UUUCCGGCGCU---UG-GGC- -5'
3684 3' -55.8 NC_001650.1 + 155254 0.67 0.91759
Target:  5'- uGGuGGUGGCGuaaaacugggucuGGCCGCaGGCCCu -3'
miRNA:   3'- gUCuCUACCGUuu-----------CCGGCGcUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 158814 0.67 0.915303
Target:  5'- -------cGCAAccGCCGCGAGCCCGa -3'
miRNA:   3'- gucucuacCGUUucCGGCGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 114575 0.67 0.915303
Target:  5'- aAGAGA-GGUcgauGAGGCgGCGGcgaaggaagaACCCGg -3'
miRNA:   3'- gUCUCUaCCGu---UUCCGgCGCU----------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 49549 0.67 0.915303
Target:  5'- uCAGAGcgacGUGaGCucuAGGUCGCGAAgCCa -3'
miRNA:   3'- -GUCUC----UAC-CGuu-UCCGGCGCUUgGGc -5'
3684 3' -55.8 NC_001650.1 + 175995 0.67 0.90942
Target:  5'- gGGGGA-GGCAuuGGCCGguggaGGGCCUa -3'
miRNA:   3'- gUCUCUaCCGUuuCCGGCg----CUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 9288 0.67 0.90942
Target:  5'- gGGGGA-GGCAuuGGCCGguggaGGGCCUa -3'
miRNA:   3'- gUCUCUaCCGUuuCCGGCg----CUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 165460 0.67 0.90942
Target:  5'- aGGGGAggaaGGCGAGcGGCC-CGAggaagcACCCGg -3'
miRNA:   3'- gUCUCUa---CCGUUU-CCGGcGCU------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 133941 0.67 0.90942
Target:  5'- cCAGAccccGGCAGGcGGCCGCaguGCCCGc -3'
miRNA:   3'- -GUCUcua-CCGUUU-CCGGCGcu-UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 72288 0.67 0.90942
Target:  5'- uGGAGGaccUGGUggGGAGGuUCGUGAACCUGu -3'
miRNA:   3'- gUCUCU---ACCG--UUUCC-GGCGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 16900 0.67 0.903306
Target:  5'- uGGGGGcccgGGgGAGGGCgGC-AGCCCGg -3'
miRNA:   3'- gUCUCUa---CCgUUUCCGgCGcUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 76581 0.67 0.903306
Target:  5'- gAGAcGAUGGCcu-GGCCGC-AGCUCa -3'
miRNA:   3'- gUCU-CUACCGuuuCCGGCGcUUGGGc -5'
3684 3' -55.8 NC_001650.1 + 102482 0.67 0.902682
Target:  5'- aGGAGGUGGCGGuacccaCCGCGGucauacacuaccaGCCCGc -3'
miRNA:   3'- gUCUCUACCGUUucc---GGCGCU-------------UGGGC- -5'
3684 3' -55.8 NC_001650.1 + 29471 0.67 0.901427
Target:  5'- uCAGGGAcgugguccuccaacUGGUGAAGaGCCuCGGAUCCGa -3'
miRNA:   3'- -GUCUCU--------------ACCGUUUC-CGGcGCUUGGGC- -5'
3684 3' -55.8 NC_001650.1 + 158724 0.67 0.901427
Target:  5'- uCGGGGgcGuGCAGGGGUCGCagguccucauccccGGACCCa -3'
miRNA:   3'- -GUCUCuaC-CGUUUCCGGCG--------------CUUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.