Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3684 | 5' | -60.7 | NC_001650.1 | + | 59988 | 0.74 | 0.282539 |
Target: 5'- uUCUGCCUccucuuCACCAGCUucUGGCCCacCUCu -3' miRNA: 3'- cAGACGGG------GUGGUCGA--ACCGGGa-GAG- -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 158105 | 0.75 | 0.229058 |
Target: 5'- -cCUGCCCCugCAGCUggggcUGGCCCa--- -3' miRNA: 3'- caGACGGGGugGUCGA-----ACCGGGagag -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 160187 | 0.77 | 0.179928 |
Target: 5'- cGUCgUGCCCCgagacgGCCAGCcucUUGGCCCUCa- -3' miRNA: 3'- -CAG-ACGGGG------UGGUCG---AACCGGGAGag -5' |
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3684 | 5' | -60.7 | NC_001650.1 | + | 111497 | 1.09 | 0.000976 |
Target: 5'- cGUCUGCCCCACCAGCUUGGCCCUCUCg -3' miRNA: 3'- -CAGACGGGGUGGUCGAACCGGGAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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