miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3697 3' -57.1 NC_001650.1 + 30421 0.66 0.912446
Target:  5'- aGGGCGCc--CUGGAGGCGcucGGCGagaCg -3'
miRNA:   3'- -UCCGUGacaGACCUCUGCau-CCGCg--G- -5'
3697 3' -57.1 NC_001650.1 + 181919 0.66 0.906515
Target:  5'- gGGGCAggGUUaUGGGGAUgagGUAGGCuguuGCCg -3'
miRNA:   3'- -UCCGUgaCAG-ACCUCUG---CAUCCG----CGG- -5'
3697 3' -57.1 NC_001650.1 + 15212 0.66 0.906515
Target:  5'- gGGGCAggGUUaUGGGGAUgagGUAGGCuguuGCCg -3'
miRNA:   3'- -UCCGUgaCAG-ACCUCUG---CAUCCG----CGG- -5'
3697 3' -57.1 NC_001650.1 + 30296 0.66 0.906515
Target:  5'- gAGGCACgcgcggGUCaGGGuccccuucuACGgGGGCGCCg -3'
miRNA:   3'- -UCCGUGa-----CAGaCCUc--------UGCaUCCGCGG- -5'
3697 3' -57.1 NC_001650.1 + 161669 0.66 0.906515
Target:  5'- cAGGCAggcUUGgg-GGAGAUGauggAGGCGCg -3'
miRNA:   3'- -UCCGU---GACagaCCUCUGCa---UCCGCGg -5'
3697 3' -57.1 NC_001650.1 + 81420 0.66 0.902847
Target:  5'- aGGGCccgccuguuccucauGCUGggagGGAGAgGccGGCGCCg -3'
miRNA:   3'- -UCCG---------------UGACaga-CCUCUgCauCCGCGG- -5'
3697 3' -57.1 NC_001650.1 + 90094 0.66 0.900357
Target:  5'- aAGGCGCcgUGUgCUGGc-ACG-AGGCGCUu -3'
miRNA:   3'- -UCCGUG--ACA-GACCucUGCaUCCGCGG- -5'
3697 3' -57.1 NC_001650.1 + 83513 0.66 0.900357
Target:  5'- cAGGCGCccgauagGUg-GGAGAgGUgcaggcacgGGGCGCCc -3'
miRNA:   3'- -UCCGUGa------CAgaCCUCUgCA---------UCCGCGG- -5'
3697 3' -57.1 NC_001650.1 + 59746 0.66 0.900357
Target:  5'- gGGGCcCgUGgcccCcGGGGGCG-AGGCGCCc -3'
miRNA:   3'- -UCCGuG-ACa---GaCCUCUGCaUCCGCGG- -5'
3697 3' -57.1 NC_001650.1 + 82721 0.66 0.893976
Target:  5'- uAGGgGCgg--UGGAuGACGcGGGCGCCu -3'
miRNA:   3'- -UCCgUGacagACCU-CUGCaUCCGCGG- -5'
3697 3' -57.1 NC_001650.1 + 48041 0.66 0.893976
Target:  5'- uGGCGCUGUucugcucgcugCUGGGGggcgcccugaACGUGGGCa-- -3'
miRNA:   3'- uCCGUGACA-----------GACCUC----------UGCAUCCGcgg -5'
3697 3' -57.1 NC_001650.1 + 88669 0.66 0.893976
Target:  5'- gGGGCAgaGggaggggaUGGAGGaGUAGGCGgCg -3'
miRNA:   3'- -UCCGUgaCag------ACCUCUgCAUCCGCgG- -5'
3697 3' -57.1 NC_001650.1 + 36400 0.66 0.893976
Target:  5'- gGGGUAgUGggCUaGGGGGCccGGGCGUCg -3'
miRNA:   3'- -UCCGUgACa-GA-CCUCUGcaUCCGCGG- -5'
3697 3' -57.1 NC_001650.1 + 51309 0.66 0.893976
Target:  5'- cGGCugUaGUCUcgcGGAG-CG--GGCGCCa -3'
miRNA:   3'- uCCGugA-CAGA---CCUCuGCauCCGCGG- -5'
3697 3' -57.1 NC_001650.1 + 157867 0.66 0.893976
Target:  5'- gAGGUGCacaccagggUGUUgagGGAGAgGgGGGCGCUg -3'
miRNA:   3'- -UCCGUG---------ACAGa--CCUCUgCaUCCGCGG- -5'
3697 3' -57.1 NC_001650.1 + 19046 0.66 0.890041
Target:  5'- gGGGUcuuuACUGUagacaguuuacauaUGGcAGACGcUGGGCGCUa -3'
miRNA:   3'- -UCCG----UGACAg-------------ACC-UCUGC-AUCCGCGG- -5'
3697 3' -57.1 NC_001650.1 + 55458 0.66 0.887374
Target:  5'- uGGGCACgGUCaGGguccuGGACac-GGCGCCc -3'
miRNA:   3'- -UCCGUGaCAGaCC-----UCUGcauCCGCGG- -5'
3697 3' -57.1 NC_001650.1 + 77185 0.66 0.880556
Target:  5'- uGGCACUca-UGGAGAUGgagaagcuGGcCGCCg -3'
miRNA:   3'- uCCGUGAcagACCUCUGCau------CC-GCGG- -5'
3697 3' -57.1 NC_001650.1 + 93287 0.66 0.880556
Target:  5'- cGGUGCUGguuaGGGACG-GGGCGCUg -3'
miRNA:   3'- uCCGUGACagacCUCUGCaUCCGCGG- -5'
3697 3' -57.1 NC_001650.1 + 68664 0.66 0.880556
Target:  5'- gGGGCgaaGCUGUCUGccAGG---GGGCGCCg -3'
miRNA:   3'- -UCCG---UGACAGACc-UCUgcaUCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.