miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3697 5' -57.8 NC_001650.1 + 50220 0.66 0.895911
Target:  5'- gCACCGUCaCCUacgGGCggagggcggggaccaUGCGCGacagggGCGCCu -3'
miRNA:   3'- gGUGGCGG-GGA---UCGa--------------ACGCGU------UGCGG- -5'
3697 5' -57.8 NC_001650.1 + 110670 0.66 0.895273
Target:  5'- gCACgCGCCCC---CUcGgGCGAUGCCg -3'
miRNA:   3'- gGUG-GCGGGGaucGAaCgCGUUGCGG- -5'
3697 5' -57.8 NC_001650.1 + 138790 0.66 0.895273
Target:  5'- gCC-CUGCCCaCUAGCccaGCGcCGugGCg -3'
miRNA:   3'- -GGuGGCGGG-GAUCGaa-CGC-GUugCGg -5'
3697 5' -57.8 NC_001650.1 + 73009 0.66 0.895273
Target:  5'- uCC-CUGCUCCUGcCUggggGCGCGGgcCGCCu -3'
miRNA:   3'- -GGuGGCGGGGAUcGAa---CGCGUU--GCGG- -5'
3697 5' -57.8 NC_001650.1 + 52840 0.66 0.895273
Target:  5'- cCCugcCCGCCCUgggAGCggGCGC---GCCu -3'
miRNA:   3'- -GGu--GGCGGGGa--UCGaaCGCGuugCGG- -5'
3697 5' -57.8 NC_001650.1 + 68441 0.66 0.895273
Target:  5'- -gGCCGUgCC--GCUgGCGC-ACGCCg -3'
miRNA:   3'- ggUGGCGgGGauCGAaCGCGuUGCGG- -5'
3697 5' -57.8 NC_001650.1 + 93922 0.66 0.895273
Target:  5'- aCC-CUGUCCCUgaaccaGGgUgGCGCGACcGCCg -3'
miRNA:   3'- -GGuGGCGGGGA------UCgAaCGCGUUG-CGG- -5'
3697 5' -57.8 NC_001650.1 + 72272 0.66 0.895273
Target:  5'- gC-CCGCgUCCUGGa-UGCGCcccGCGCCg -3'
miRNA:   3'- gGuGGCG-GGGAUCgaACGCGu--UGCGG- -5'
3697 5' -57.8 NC_001650.1 + 45383 0.66 0.894633
Target:  5'- cCCAgcCCGuacaguuCCCCUAGggUGUGCAGcCGCa -3'
miRNA:   3'- -GGU--GGC-------GGGGAUCgaACGCGUU-GCGg -5'
3697 5' -57.8 NC_001650.1 + 30942 0.66 0.894633
Target:  5'- gCACCGCCC-------GCGCGACGUCc -3'
miRNA:   3'- gGUGGCGGGgaucgaaCGCGUUGCGG- -5'
3697 5' -57.8 NC_001650.1 + 56053 0.66 0.888776
Target:  5'- gCCACCGCCUCccuca-GCGCGGCGaUCu -3'
miRNA:   3'- -GGUGGCGGGGaucgaaCGCGUUGC-GG- -5'
3697 5' -57.8 NC_001650.1 + 133458 0.66 0.888776
Target:  5'- gCC-CCGUCCUgcgAGCagGUggugGCGGCGCCc -3'
miRNA:   3'- -GGuGGCGGGGa--UCGaaCG----CGUUGCGG- -5'
3697 5' -57.8 NC_001650.1 + 155079 0.66 0.888776
Target:  5'- cCUGCCGUCCCUGGa--GCaCAGCcccGCCa -3'
miRNA:   3'- -GGUGGCGGGGAUCgaaCGcGUUG---CGG- -5'
3697 5' -57.8 NC_001650.1 + 126675 0.66 0.888776
Target:  5'- aCCACaggcccaGCCCC-AGCcccaGC-CGGCGCCu -3'
miRNA:   3'- -GGUGg------CGGGGaUCGaa--CGcGUUGCGG- -5'
3697 5' -57.8 NC_001650.1 + 129305 0.66 0.888776
Target:  5'- cCgGCCGCCCg-AGCgagGCcGCGA-GCCg -3'
miRNA:   3'- -GgUGGCGGGgaUCGaa-CG-CGUUgCGG- -5'
3697 5' -57.8 NC_001650.1 + 54594 0.66 0.888776
Target:  5'- gCCACCGCCgCCcAGUccucgccCGUGAUGCCc -3'
miRNA:   3'- -GGUGGCGG-GGaUCGaac----GCGUUGCGG- -5'
3697 5' -57.8 NC_001650.1 + 77397 0.66 0.888776
Target:  5'- gCACCGUCCaUGGa--GCGgGugGCCg -3'
miRNA:   3'- gGUGGCGGGgAUCgaaCGCgUugCGG- -5'
3697 5' -57.8 NC_001650.1 + 42951 0.66 0.882065
Target:  5'- cCCGCgCGCCCgCUcGCcgcCGCGGgGCCg -3'
miRNA:   3'- -GGUG-GCGGG-GAuCGaacGCGUUgCGG- -5'
3697 5' -57.8 NC_001650.1 + 57830 0.66 0.882065
Target:  5'- gCAUCGCUCCgGGCggUG-GCAGCGgCa -3'
miRNA:   3'- gGUGGCGGGGaUCGa-ACgCGUUGCgG- -5'
3697 5' -57.8 NC_001650.1 + 104823 0.66 0.882065
Target:  5'- gCGCCGCCCg-GGg--GCGCGACGg- -3'
miRNA:   3'- gGUGGCGGGgaUCgaaCGCGUUGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.