miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
370 3' -64 AC_000011.1 + 8572 0.66 0.255476
Target:  5'- cGCGGCGcCGAcGuGCCCcugccgccccUGCCUCCGg -3'
miRNA:   3'- -CGCCGCcGCU-CuCGGGca--------GCGGAGGC- -5'
370 3' -64 AC_000011.1 + 11275 0.66 0.248593
Target:  5'- uGCGcGCGcGCGGGgcugauccccgucAGCUCGUCcGCCUCg- -3'
miRNA:   3'- -CGC-CGC-CGCUC-------------UCGGGCAG-CGGAGgc -5'
370 3' -64 AC_000011.1 + 8508 0.66 0.243076
Target:  5'- aGgGGCGGCaGGGGCaCGUCGgCgCCGc -3'
miRNA:   3'- -CgCCGCCGcUCUCGgGCAGCgGaGGC- -5'
370 3' -64 AC_000011.1 + 25842 0.66 0.239454
Target:  5'- aGCGGCagggauacaaguccuGGCGGGGGCacaaaaacgCCaUCGUCUCCu -3'
miRNA:   3'- -CGCCG---------------CCGCUCUCG---------GGcAGCGGAGGc -5'
370 3' -64 AC_000011.1 + 10334 0.66 0.237065
Target:  5'- cGCGuCcGCGAGuuCCCGcgCGCCUCCa -3'
miRNA:   3'- -CGCcGcCGCUCucGGGCa-GCGGAGGc -5'
370 3' -64 AC_000011.1 + 9840 0.66 0.237065
Target:  5'- cGCGGCcgugcaugcGCGuGAGCCCGaaGCCgcgCUGg -3'
miRNA:   3'- -CGCCGc--------CGCuCUCGGGCagCGGa--GGC- -5'
370 3' -64 AC_000011.1 + 11138 0.66 0.237065
Target:  5'- cGCGG-GGCGGGAGCUgCGgcgCGgCCUggaCCGa -3'
miRNA:   3'- -CGCCgCCGCUCUCGG-GCa--GC-GGA---GGC- -5'
370 3' -64 AC_000011.1 + 15938 0.66 0.23118
Target:  5'- gGCGGCGGC-AGcGGCCa-UCGCCagcaugUCCGc -3'
miRNA:   3'- -CGCCGCCGcUC-UCGGgcAGCGG------AGGC- -5'
370 3' -64 AC_000011.1 + 13367 0.67 0.198414
Target:  5'- uGCcGCGGCG-GuGCCCGagGCCgCCa -3'
miRNA:   3'- -CGcCGCCGCuCuCGGGCagCGGaGGc -5'
370 3' -64 AC_000011.1 + 25075 0.67 0.188425
Target:  5'- --aGCGGCGAGGGCCUGcucgagUGCCacugCCGc -3'
miRNA:   3'- cgcCGCCGCUCUCGGGCa-----GCGGa---GGC- -5'
370 3' -64 AC_000011.1 + 10706 0.68 0.174273
Target:  5'- cGCGGCuaaCGAGGGCguggcugccCCGUCGUUUCCa -3'
miRNA:   3'- -CGCCGcc-GCUCUCG---------GGCAGCGGAGGc -5'
370 3' -64 AC_000011.1 + 15775 0.68 0.174273
Target:  5'- gGCGGCGGCGcAucGCCCGgCGgCaCCGg -3'
miRNA:   3'- -CGCCGCCGC-UcuCGGGCaGCgGaGGC- -5'
370 3' -64 AC_000011.1 + 12044 0.68 0.174273
Target:  5'- uGCgGGCGGCGcugcAGAGCCa---GCCgUCCGg -3'
miRNA:   3'- -CG-CCGCCGC----UCUCGGgcagCGG-AGGC- -5'
370 3' -64 AC_000011.1 + 13939 0.68 0.16977
Target:  5'- gGCGGCGGCGAuGcAGCCCc-CGCuggaggCUCCu -3'
miRNA:   3'- -CGCCGCCGCU-C-UCGGGcaGCG------GAGGc -5'
370 3' -64 AC_000011.1 + 10177 0.69 0.15688
Target:  5'- uCGGUGGCGGGGGCgCCGggCGCgaggUCCu -3'
miRNA:   3'- cGCCGCCGCUCUCG-GGCa-GCGg---AGGc -5'
370 3' -64 AC_000011.1 + 8455 0.69 0.152784
Target:  5'- aGCGGCGGCGAGGaCgCG-CGCCgggCGg -3'
miRNA:   3'- -CGCCGCCGCUCUcGgGCaGCGGag-GC- -5'
370 3' -64 AC_000011.1 + 15138 0.69 0.151977
Target:  5'- cCGGUGGUGGGcgccgagcuccuGCCCGUCuaCUCCa -3'
miRNA:   3'- cGCCGCCGCUCu-----------CGGGCAGcgGAGGc -5'
370 3' -64 AC_000011.1 + 23232 0.69 0.141073
Target:  5'- gGCGGaGGCGAcGGGCUC-UCGCCgCCGc -3'
miRNA:   3'- -CGCCgCCGCU-CUCGGGcAGCGGaGGC- -5'
370 3' -64 AC_000011.1 + 9284 0.71 0.107746
Target:  5'- gGUGGCGGgggaGGGGGCCugCGUCGCCggCGg -3'
miRNA:   3'- -CGCCGCCg---CUCUCGG--GCAGCGGagGC- -5'
370 3' -64 AC_000011.1 + 15736 0.71 0.102032
Target:  5'- cGCGGCGGCGGGGguguaguugcGCgCGUCgGCCaCCa -3'
miRNA:   3'- -CGCCGCCGCUCU----------CGgGCAG-CGGaGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.