Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
370 | 3' | -64 | AC_000011.1 | + | 9284 | 0.71 | 0.107746 |
Target: 5'- gGUGGCGGgggaGGGGGCCugCGUCGCCggCGg -3' miRNA: 3'- -CGCCGCCg---CUCUCGG--GCAGCGGagGC- -5' |
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370 | 3' | -64 | AC_000011.1 | + | 8508 | 0.66 | 0.243076 |
Target: 5'- aGgGGCGGCaGGGGCaCGUCGgCgCCGc -3' miRNA: 3'- -CgCCGCCGcUCUCGgGCAGCgGaGGC- -5' |
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370 | 3' | -64 | AC_000011.1 | + | 25842 | 0.66 | 0.239454 |
Target: 5'- aGCGGCagggauacaaguccuGGCGGGGGCacaaaaacgCCaUCGUCUCCu -3' miRNA: 3'- -CGCCG---------------CCGCUCUCG---------GGcAGCGGAGGc -5' |
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370 | 3' | -64 | AC_000011.1 | + | 9840 | 0.66 | 0.237065 |
Target: 5'- cGCGGCcgugcaugcGCGuGAGCCCGaaGCCgcgCUGg -3' miRNA: 3'- -CGCCGc--------CGCuCUCGGGCagCGGa--GGC- -5' |
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370 | 3' | -64 | AC_000011.1 | + | 11138 | 0.66 | 0.237065 |
Target: 5'- cGCGG-GGCGGGAGCUgCGgcgCGgCCUggaCCGa -3' miRNA: 3'- -CGCCgCCGCUCUCGG-GCa--GC-GGA---GGC- -5' |
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370 | 3' | -64 | AC_000011.1 | + | 15938 | 0.66 | 0.23118 |
Target: 5'- gGCGGCGGC-AGcGGCCa-UCGCCagcaugUCCGc -3' miRNA: 3'- -CGCCGCCGcUC-UCGGgcAGCGG------AGGC- -5' |
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370 | 3' | -64 | AC_000011.1 | + | 13367 | 0.67 | 0.198414 |
Target: 5'- uGCcGCGGCG-GuGCCCGagGCCgCCa -3' miRNA: 3'- -CGcCGCCGCuCuCGGGCagCGGaGGc -5' |
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370 | 3' | -64 | AC_000011.1 | + | 25075 | 0.67 | 0.188425 |
Target: 5'- --aGCGGCGAGGGCCUGcucgagUGCCacugCCGc -3' miRNA: 3'- cgcCGCCGCUCUCGGGCa-----GCGGa---GGC- -5' |
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370 | 3' | -64 | AC_000011.1 | + | 10706 | 0.68 | 0.174273 |
Target: 5'- cGCGGCuaaCGAGGGCguggcugccCCGUCGUUUCCa -3' miRNA: 3'- -CGCCGcc-GCUCUCG---------GGCAGCGGAGGc -5' |
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370 | 3' | -64 | AC_000011.1 | + | 15775 | 0.68 | 0.174273 |
Target: 5'- gGCGGCGGCGcAucGCCCGgCGgCaCCGg -3' miRNA: 3'- -CGCCGCCGC-UcuCGGGCaGCgGaGGC- -5' |
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370 | 3' | -64 | AC_000011.1 | + | 23232 | 0.69 | 0.141073 |
Target: 5'- gGCGGaGGCGAcGGGCUC-UCGCCgCCGc -3' miRNA: 3'- -CGCCgCCGCU-CUCGGGcAGCGGaGGC- -5' |
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370 | 3' | -64 | AC_000011.1 | + | 15138 | 0.69 | 0.151977 |
Target: 5'- cCGGUGGUGGGcgccgagcuccuGCCCGUCuaCUCCa -3' miRNA: 3'- cGCCGCCGCUCu-----------CGGGCAGcgGAGGc -5' |
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370 | 3' | -64 | AC_000011.1 | + | 8455 | 0.69 | 0.152784 |
Target: 5'- aGCGGCGGCGAGGaCgCG-CGCCgggCGg -3' miRNA: 3'- -CGCCGCCGCUCUcGgGCaGCGGag-GC- -5' |
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370 | 3' | -64 | AC_000011.1 | + | 10177 | 0.69 | 0.15688 |
Target: 5'- uCGGUGGCGGGGGCgCCGggCGCgaggUCCu -3' miRNA: 3'- cGCCGCCGCUCUCG-GGCa-GCGg---AGGc -5' |
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370 | 3' | -64 | AC_000011.1 | + | 13939 | 0.68 | 0.16977 |
Target: 5'- gGCGGCGGCGAuGcAGCCCc-CGCuggaggCUCCu -3' miRNA: 3'- -CGCCGCCGCU-C-UCGGGcaGCG------GAGGc -5' |
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370 | 3' | -64 | AC_000011.1 | + | 12044 | 0.68 | 0.174273 |
Target: 5'- uGCgGGCGGCGcugcAGAGCCa---GCCgUCCGg -3' miRNA: 3'- -CG-CCGCCGC----UCUCGGgcagCGG-AGGC- -5' |
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370 | 3' | -64 | AC_000011.1 | + | 23296 | 1.09 | 0.000101 |
Target: 5'- cGCGGCGGCGAGAGCCCGUCGCCUCCGc -3' miRNA: 3'- -CGCCGCCGCUCUCGGGCAGCGGAGGC- -5' |
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370 | 3' | -64 | AC_000011.1 | + | 15736 | 0.71 | 0.102032 |
Target: 5'- cGCGGCGGCGGGGguguaguugcGCgCGUCgGCCaCCa -3' miRNA: 3'- -CGCCGCCGCUCU----------CGgGCAG-CGGaGGc -5' |
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370 | 3' | -64 | AC_000011.1 | + | 10334 | 0.66 | 0.237065 |
Target: 5'- cGCGuCcGCGAGuuCCCGcgCGCCUCCa -3' miRNA: 3'- -CGCcGcCGCUCucGGGCa-GCGGAGGc -5' |
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370 | 3' | -64 | AC_000011.1 | + | 11275 | 0.66 | 0.248593 |
Target: 5'- uGCGcGCGcGCGGGgcugauccccgucAGCUCGUCcGCCUCg- -3' miRNA: 3'- -CGC-CGC-CGCUC-------------UCGGGCAG-CGGAGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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