miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
370 5' -54.6 AC_000011.1 + 4570 0.66 0.643236
Target:  5'- cCCCGAA---ACGUcuuuGCCcagGCCGCCGCc -3'
miRNA:   3'- -GGGCUUcucUGUA----UGGa--UGGCGGCGc -5'
370 5' -54.6 AC_000011.1 + 17826 0.66 0.643236
Target:  5'- aCCGGGuccAGGCGgcuguugAUCUGCCGCUGCa -3'
miRNA:   3'- gGGCUUc--UCUGUa------UGGAUGGCGGCGc -5'
370 5' -54.6 AC_000011.1 + 22817 0.67 0.631995
Target:  5'- gCCCGAGcaGGGCGaggUgUACCGCCGCa -3'
miRNA:   3'- -GGGCUUc-UCUGUau-GgAUGGCGGCGc -5'
370 5' -54.6 AC_000011.1 + 24422 0.67 0.620754
Target:  5'- aCCGuGGAGcuggaGUGCCUG-CGCCGCu -3'
miRNA:   3'- gGGCuUCUCug---UAUGGAUgGCGGCGc -5'
370 5' -54.6 AC_000011.1 + 8516 0.67 0.620754
Target:  5'- gCCCGgcGc-GCGU-CCUcGCCGCCGCu -3'
miRNA:   3'- -GGGCuuCucUGUAuGGA-UGGCGGCGc -5'
370 5' -54.6 AC_000011.1 + 14856 0.67 0.609524
Target:  5'- cCUCGGuAGAGGCgGUAgCUACgGCUGCa -3'
miRNA:   3'- -GGGCU-UCUCUG-UAUgGAUGgCGGCGc -5'
370 5' -54.6 AC_000011.1 + 16964 0.67 0.598314
Target:  5'- aCCCGGu----CAUACCagcaGCCGCCGCc -3'
miRNA:   3'- -GGGCUucucuGUAUGGa---UGGCGGCGc -5'
370 5' -54.6 AC_000011.1 + 33809 0.67 0.598314
Target:  5'- cCCCGcAGcAGuCGcUGCC-GCCGCCGCu -3'
miRNA:   3'- -GGGCuUC-UCuGU-AUGGaUGGCGGCGc -5'
370 5' -54.6 AC_000011.1 + 15918 0.67 0.575994
Target:  5'- aCCCGGAGAcGCGcgGCC-ACgGCgGCGg -3'
miRNA:   3'- -GGGCUUCUcUGUa-UGGaUGgCGgCGC- -5'
370 5' -54.6 AC_000011.1 + 33991 0.67 0.575994
Target:  5'- aCCUGAGcGAGauccGCAUGCgCUGcugcgcCCGCCGCa -3'
miRNA:   3'- -GGGCUU-CUC----UGUAUG-GAU------GGCGGCGc -5'
370 5' -54.6 AC_000011.1 + 23068 0.67 0.575994
Target:  5'- gCCGAGGAGGa--GCUgGCgGCCGUGg -3'
miRNA:   3'- gGGCUUCUCUguaUGGaUGgCGGCGC- -5'
370 5' -54.6 AC_000011.1 + 13442 0.68 0.564902
Target:  5'- gCUCGGGaaaGGACuggcgGCCUcgggcACCGCCGCGg -3'
miRNA:   3'- -GGGCUUc--UCUGua---UGGA-----UGGCGGCGC- -5'
370 5' -54.6 AC_000011.1 + 8210 0.68 0.553866
Target:  5'- gCCGAGGucuGGACcUGCCUcCCG-CGCGg -3'
miRNA:   3'- gGGCUUC---UCUGuAUGGAuGGCgGCGC- -5'
370 5' -54.6 AC_000011.1 + 3638 0.68 0.531997
Target:  5'- aCCCuGAGcucuucgucguuGGACGcAgCUGCCGCCGCa -3'
miRNA:   3'- -GGGcUUC------------UCUGUaUgGAUGGCGGCGc -5'
370 5' -54.6 AC_000011.1 + 17054 0.68 0.531997
Target:  5'- -gCGGAGAG-UGUACCgccGCgGCCGCGc -3'
miRNA:   3'- ggGCUUCUCuGUAUGGa--UGgCGGCGC- -5'
370 5' -54.6 AC_000011.1 + 10681 0.69 0.510448
Target:  5'- cCCCGGuucGAGGCcgGCCggauuCCGCgGCu -3'
miRNA:   3'- -GGGCUu--CUCUGuaUGGau---GGCGgCGc -5'
370 5' -54.6 AC_000011.1 + 4047 0.69 0.489271
Target:  5'- aCCGguGGucCAggGCCUACCGCgCGCGa -3'
miRNA:   3'- gGGCuuCUcuGUa-UGGAUGGCG-GCGC- -5'
370 5' -54.6 AC_000011.1 + 23233 0.7 0.438254
Target:  5'- -gCGGAGGcGACGgGCuCUcGCCGCCGCGa -3'
miRNA:   3'- ggGCUUCU-CUGUaUG-GA-UGGCGGCGC- -5'
370 5' -54.6 AC_000011.1 + 13956 0.71 0.399713
Target:  5'- cCCCGcuGGAGGCuccUACgUGCCcCCGCGg -3'
miRNA:   3'- -GGGCu-UCUCUGu--AUGgAUGGcGGCGC- -5'
370 5' -54.6 AC_000011.1 + 16013 0.73 0.268733
Target:  5'- gCCgCGGGcGGGACAUGCuggcgauggccgCUGCCGCCGCc -3'
miRNA:   3'- -GG-GCUU-CUCUGUAUG------------GAUGGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.