miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3700 3' -59.2 NC_001650.1 + 57083 0.66 0.825175
Target:  5'- cGCaGGCUCCggGGCC-CGgUGGUCUCc -3'
miRNA:   3'- uCG-CCGAGGagUCGGaGC-GCUAGAGa -5'
3700 3' -59.2 NC_001650.1 + 56974 0.66 0.80575
Target:  5'- cGCGGCUCCUCuuucucuugagcgaGGCCaUGuCGGUCa-- -3'
miRNA:   3'- uCGCCGAGGAG--------------UCGGaGC-GCUAGaga -5'
3700 3' -59.2 NC_001650.1 + 110354 0.66 0.79088
Target:  5'- uGGCGggcGCUCCgccCAGCCUgGUGAUguaCUCg -3'
miRNA:   3'- -UCGC---CGAGGa--GUCGGAgCGCUA---GAGa -5'
3700 3' -59.2 NC_001650.1 + 84402 0.66 0.781947
Target:  5'- gGGCGGaggCCUgAGCaUCGgGGUCUCc -3'
miRNA:   3'- -UCGCCga-GGAgUCGgAGCgCUAGAGa -5'
3700 3' -59.2 NC_001650.1 + 152245 0.67 0.763707
Target:  5'- aGGCGGaCUCCgcgaggCAGCUccCGCGAagCUCg -3'
miRNA:   3'- -UCGCC-GAGGa-----GUCGGa-GCGCUa-GAGa -5'
3700 3' -59.2 NC_001650.1 + 157428 0.67 0.754417
Target:  5'- cGCGGCUCCccCGGCC-CGCuc-CUCa -3'
miRNA:   3'- uCGCCGAGGa-GUCGGaGCGcuaGAGa -5'
3700 3' -59.2 NC_001650.1 + 83661 0.67 0.745025
Target:  5'- cGGCGGgUgCgacgaGGCCcugCGCGAUCUCa -3'
miRNA:   3'- -UCGCCgAgGag---UCGGa--GCGCUAGAGa -5'
3700 3' -59.2 NC_001650.1 + 183622 0.67 0.729805
Target:  5'- gGGCGGCagC-CGGCCUCGCccccucauuugcauGUCUCUg -3'
miRNA:   3'- -UCGCCGagGaGUCGGAGCGc-------------UAGAGA- -5'
3700 3' -59.2 NC_001650.1 + 155202 0.68 0.716318
Target:  5'- uGCGGguaCUCCUCGGCCggGaCGGUCUg- -3'
miRNA:   3'- uCGCC---GAGGAGUCGGagC-GCUAGAga -5'
3700 3' -59.2 NC_001650.1 + 22588 0.68 0.706602
Target:  5'- gGGCGGCggcgCCUCGGUCUUuauguuggGCGAcuUCUUUc -3'
miRNA:   3'- -UCGCCGa---GGAGUCGGAG--------CGCU--AGAGA- -5'
3700 3' -59.2 NC_001650.1 + 36556 0.68 0.694864
Target:  5'- gAGCGGCUCC-CGGCCgCGCuucccaccggCUCa -3'
miRNA:   3'- -UCGCCGAGGaGUCGGaGCGcua-------GAGa -5'
3700 3' -59.2 NC_001650.1 + 16915 0.7 0.571851
Target:  5'- gGGCGGCagCC-CGGCCUCGCccccucauuugcauGUCUCUg -3'
miRNA:   3'- -UCGCCGa-GGaGUCGGAGCGc-------------UAGAGA- -5'
3700 3' -59.2 NC_001650.1 + 52633 0.75 0.318532
Target:  5'- uGGCGGUgggucacgggcaggaCCUCGGCCUCGgGGUUUCUc -3'
miRNA:   3'- -UCGCCGa--------------GGAGUCGGAGCgCUAGAGA- -5'
3700 3' -59.2 NC_001650.1 + 100539 1.08 0.002047
Target:  5'- cAGCGGCUCCUCAGCCUCGCGAUCUCUa -3'
miRNA:   3'- -UCGCCGAGGAGUCGGAGCGCUAGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.