miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3700 5' -53.3 NC_001650.1 + 52101 0.66 0.986504
Target:  5'- aGUAG-CUGCCGGUgggCGgcccguaggGGUAGggGGu -3'
miRNA:   3'- -CGUCuGGUGGUCGa--GCa--------CCAUCuuCC- -5'
3700 5' -53.3 NC_001650.1 + 112635 0.66 0.986504
Target:  5'- gGUGGACCuCCaguuugaggAGCUCGUGcGccGAGGGg -3'
miRNA:   3'- -CGUCUGGuGG---------UCGAGCAC-CauCUUCC- -5'
3700 5' -53.3 NC_001650.1 + 50281 0.66 0.986504
Target:  5'- uGCGG-CCGCCuGC-CGgGGUcuGGggGGc -3'
miRNA:   3'- -CGUCuGGUGGuCGaGCaCCA--UCuuCC- -5'
3700 5' -53.3 NC_001650.1 + 181056 0.66 0.986504
Target:  5'- --uGGCCACCGGCcCGUuGUAGccaauGGGg -3'
miRNA:   3'- cguCUGGUGGUCGaGCAcCAUCu----UCC- -5'
3700 5' -53.3 NC_001650.1 + 107370 0.66 0.986504
Target:  5'- uGCAGAUCGCCAGCUgCGcGGcGGc--- -3'
miRNA:   3'- -CGUCUGGUGGUCGA-GCaCCaUCuucc -5'
3700 5' -53.3 NC_001650.1 + 14349 0.66 0.986504
Target:  5'- --uGGCCACCGGCcCGUuGUAGccaauGGGg -3'
miRNA:   3'- cguCUGGUGGUCGaGCAcCAUCu----UCC- -5'
3700 5' -53.3 NC_001650.1 + 98655 0.66 0.985336
Target:  5'- cGCGGGCCuguugauGCC-GCUCagaaaccugaucaggGUGGUcuuGGAGGGg -3'
miRNA:   3'- -CGUCUGG-------UGGuCGAG---------------CACCA---UCUUCC- -5'
3700 5' -53.3 NC_001650.1 + 124872 0.66 0.984812
Target:  5'- -gAGAgCCGCCgccuuucgaGGCUCGaGGgAGAGGGg -3'
miRNA:   3'- cgUCU-GGUGG---------UCGAGCaCCaUCUUCC- -5'
3700 5' -53.3 NC_001650.1 + 142675 0.66 0.984812
Target:  5'- -gAGACC-CCGGCU-GUGGUGGuccAAGa -3'
miRNA:   3'- cgUCUGGuGGUCGAgCACCAUC---UUCc -5'
3700 5' -53.3 NC_001650.1 + 26815 0.66 0.984812
Target:  5'- gGCAGgGCUACCAGUUCcUGc-AGAAGGc -3'
miRNA:   3'- -CGUC-UGGUGGUCGAGcACcaUCUUCC- -5'
3700 5' -53.3 NC_001650.1 + 75746 0.66 0.984812
Target:  5'- -gGGACC-CCAcGCgcaCGUGGUucuugagguAGGAGGa -3'
miRNA:   3'- cgUCUGGuGGU-CGa--GCACCA---------UCUUCC- -5'
3700 5' -53.3 NC_001650.1 + 127541 0.66 0.982964
Target:  5'- -aGGACgACgAGUUCGaGGgGGAAGGg -3'
miRNA:   3'- cgUCUGgUGgUCGAGCaCCaUCUUCC- -5'
3700 5' -53.3 NC_001650.1 + 94970 0.66 0.982964
Target:  5'- aCAGGCCcucguUCAGUUCGgUGGcgaAGAGGGg -3'
miRNA:   3'- cGUCUGGu----GGUCGAGC-ACCa--UCUUCC- -5'
3700 5' -53.3 NC_001650.1 + 63729 0.66 0.98095
Target:  5'- aGgAGGCCACCcuCagGaGGUAGAAGGc -3'
miRNA:   3'- -CgUCUGGUGGucGagCaCCAUCUUCC- -5'
3700 5' -53.3 NC_001650.1 + 119174 0.66 0.976397
Target:  5'- cGCAGGaggGCCAGCUCGU----GAAGGa -3'
miRNA:   3'- -CGUCUgg-UGGUCGAGCAccauCUUCC- -5'
3700 5' -53.3 NC_001650.1 + 102102 0.66 0.976397
Target:  5'- gGCGGACCAucaaacCCAGCccCGUaGGagcaGGAAGGc -3'
miRNA:   3'- -CGUCUGGU------GGUCGa-GCA-CCa---UCUUCC- -5'
3700 5' -53.3 NC_001650.1 + 80491 0.67 0.973843
Target:  5'- gGCAGGgaguUCACCuccgugggcaAGCUCGUguGGUGGGAcGGg -3'
miRNA:   3'- -CGUCU----GGUGG----------UCGAGCA--CCAUCUU-CC- -5'
3700 5' -53.3 NC_001650.1 + 141671 0.67 0.973843
Target:  5'- aGCAGAUCACUAcCUCG-GGUGuGAcGGu -3'
miRNA:   3'- -CGUCUGGUGGUcGAGCaCCAU-CUuCC- -5'
3700 5' -53.3 NC_001650.1 + 24797 0.67 0.973843
Target:  5'- gGUAGAUgAUguGCUUuuaGUGGUAGAugAGGu -3'
miRNA:   3'- -CGUCUGgUGguCGAG---CACCAUCU--UCC- -5'
3700 5' -53.3 NC_001650.1 + 130055 0.67 0.973843
Target:  5'- aGCGGGCCuACguGCagGgGGUGGAgAGGg -3'
miRNA:   3'- -CGUCUGG-UGguCGagCaCCAUCU-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.