miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3701 3' -54.9 NC_001650.1 + 60750 0.66 0.951741
Target:  5'- --gUCgGCCAGGAgcuccccguagGUgcuggGCAGGGGCg -3'
miRNA:   3'- gagAGgUGGUCUUa----------CAa----CGUCCCCGa -5'
3701 3' -54.9 NC_001650.1 + 42503 0.66 0.951741
Target:  5'- uUCUCC-CCAGuGUGUuuggGCAGguGGGCc -3'
miRNA:   3'- gAGAGGuGGUCuUACAa---CGUC--CCCGa -5'
3701 3' -54.9 NC_001650.1 + 134543 0.66 0.951741
Target:  5'- -aCUaCCACCuGggUGgggGCguagAGGGGCa -3'
miRNA:   3'- gaGA-GGUGGuCuuACaa-CG----UCCCCGa -5'
3701 3' -54.9 NC_001650.1 + 149780 0.66 0.951741
Target:  5'- cCUCUCCACCccGGggUagaGCauucuaauGGGGGCa -3'
miRNA:   3'- -GAGAGGUGG--UCuuAcaaCG--------UCCCCGa -5'
3701 3' -54.9 NC_001650.1 + 66867 0.66 0.947526
Target:  5'- ---gCCGCgGGAGgcgccgGggGCGGGGGCg -3'
miRNA:   3'- gagaGGUGgUCUUa-----CaaCGUCCCCGa -5'
3701 3' -54.9 NC_001650.1 + 136083 0.66 0.947526
Target:  5'- ---gCCGCCAuGAAg---GCGGGGGCg -3'
miRNA:   3'- gagaGGUGGU-CUUacaaCGUCCCCGa -5'
3701 3' -54.9 NC_001650.1 + 26107 0.66 0.943074
Target:  5'- -cCUCCauggGCCAGccccagcUGCAGGGGCa -3'
miRNA:   3'- gaGAGG----UGGUCuuaca--ACGUCCCCGa -5'
3701 3' -54.9 NC_001650.1 + 82598 0.66 0.943074
Target:  5'- --gUCCACCAGGAgcgccucggggaUGggGaagAGGGGCUg -3'
miRNA:   3'- gagAGGUGGUCUU------------ACaaCg--UCCCCGA- -5'
3701 3' -54.9 NC_001650.1 + 62704 0.66 0.938384
Target:  5'- -cCUCCcugACCAGccggugggaGAUGcUGguGGGGCUg -3'
miRNA:   3'- gaGAGG---UGGUC---------UUACaACguCCCCGA- -5'
3701 3' -54.9 NC_001650.1 + 137956 0.66 0.938384
Target:  5'- cCUCggggucagCCACCGGucgc--GCGGGGGCg -3'
miRNA:   3'- -GAGa-------GGUGGUCuuacaaCGUCCCCGa -5'
3701 3' -54.9 NC_001650.1 + 98562 0.66 0.933452
Target:  5'- aUCUUgGCCAGAGU-UUGCGGGGuCa -3'
miRNA:   3'- gAGAGgUGGUCUUAcAACGUCCCcGa -5'
3701 3' -54.9 NC_001650.1 + 173672 0.66 0.933452
Target:  5'- -gCUCCAUCAGccgGUUGCuucauguagAGGGGUg -3'
miRNA:   3'- gaGAGGUGGUCuuaCAACG---------UCCCCGa -5'
3701 3' -54.9 NC_001650.1 + 6966 0.67 0.928279
Target:  5'- -gCUCCAUCAGccgGUUGCuucuguagAGGGGUg -3'
miRNA:   3'- gaGAGGUGGUCuuaCAACG--------UCCCCGa -5'
3701 3' -54.9 NC_001650.1 + 121962 0.67 0.917206
Target:  5'- -gCUCCccgaGCUGGAggccAUGcUGCGGGGGCg -3'
miRNA:   3'- gaGAGG----UGGUCU----UACaACGUCCCCGa -5'
3701 3' -54.9 NC_001650.1 + 87099 0.67 0.905167
Target:  5'- gUgUCUAgCAGggUGUUGgGGGGGa- -3'
miRNA:   3'- gAgAGGUgGUCuuACAACgUCCCCga -5'
3701 3' -54.9 NC_001650.1 + 26725 0.67 0.905167
Target:  5'- aUCUUCGCCGGGcccGgccUGgAGGGGCUg -3'
miRNA:   3'- gAGAGGUGGUCUua-Ca--ACgUCCCCGA- -5'
3701 3' -54.9 NC_001650.1 + 143188 0.67 0.898791
Target:  5'- cCUCUgCugCGGGggGUcauCAGGGGCUg -3'
miRNA:   3'- -GAGAgGugGUCUuaCAac-GUCCCCGA- -5'
3701 3' -54.9 NC_001650.1 + 147455 0.68 0.885336
Target:  5'- -cCagCACCGGggUGUUGUAGaacccGGGCg -3'
miRNA:   3'- gaGagGUGGUCuuACAACGUC-----CCCGa -5'
3701 3' -54.9 NC_001650.1 + 11898 0.68 0.885336
Target:  5'- -aCUCUACCcugugaccaaugGGAAUGUgugGUgAGGGGCUa -3'
miRNA:   3'- gaGAGGUGG------------UCUUACAa--CG-UCCCCGA- -5'
3701 3' -54.9 NC_001650.1 + 64924 0.68 0.878983
Target:  5'- -cCUCCAgCCAGucuacuccggGCAGGGGCa -3'
miRNA:   3'- gaGAGGU-GGUCuuacaa----CGUCCCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.