miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3701 5' -53.2 NC_001650.1 + 109172 0.66 0.981723
Target:  5'- cAGGCGGUCC-CGCUCUgCGuUUCAGAg -3'
miRNA:   3'- cUUUGUCGGGcGUGAGGaGC-AAGUCU- -5'
3701 5' -53.2 NC_001650.1 + 118080 0.66 0.981723
Target:  5'- ---cCAGCCgcgCGUACUCCUCG-UCAa- -3'
miRNA:   3'- cuuuGUCGG---GCGUGAGGAGCaAGUcu -5'
3701 5' -53.2 NC_001650.1 + 111203 0.66 0.981723
Target:  5'- cAGGCGGCCCGCGC-CCcCaggCAGGa -3'
miRNA:   3'- cUUUGUCGGGCGUGaGGaGcaaGUCU- -5'
3701 5' -53.2 NC_001650.1 + 75158 0.66 0.981307
Target:  5'- cGGAGCGGCagauggaguagaCGCGCUCCagGcUCAGGc -3'
miRNA:   3'- -CUUUGUCGg-----------GCGUGAGGagCaAGUCU- -5'
3701 5' -53.2 NC_001650.1 + 27577 0.66 0.977245
Target:  5'- aGAACGGCCUGCcCUCCUUcc-CGGGc -3'
miRNA:   3'- cUUUGUCGGGCGuGAGGAGcaaGUCU- -5'
3701 5' -53.2 NC_001650.1 + 153001 0.67 0.955229
Target:  5'- ---cCGGCCCGCcccguugaGgaCCUCGUUCAGc -3'
miRNA:   3'- cuuuGUCGGGCG--------UgaGGAGCAAGUCu -5'
3701 5' -53.2 NC_001650.1 + 161388 0.68 0.951197
Target:  5'- ---uCAGagaCCGC-CUCCUCGggCAGGa -3'
miRNA:   3'- cuuuGUCg--GGCGuGAGGAGCaaGUCU- -5'
3701 5' -53.2 NC_001650.1 + 62285 0.68 0.942421
Target:  5'- --cACGGCCCGCGCgaaCUCGggCGc- -3'
miRNA:   3'- cuuUGUCGGGCGUGag-GAGCaaGUcu -5'
3701 5' -53.2 NC_001650.1 + 80796 0.68 0.937671
Target:  5'- -cAAgAGCCUGCugUCCcugaUGUUCGGAc -3'
miRNA:   3'- cuUUgUCGGGCGugAGGa---GCAAGUCU- -5'
3701 5' -53.2 NC_001650.1 + 72037 0.68 0.934202
Target:  5'- -uAGCGGCCCucacgcuggcguaGCACUCCUCuucugugcaggugguGUUCAGc -3'
miRNA:   3'- cuUUGUCGGG-------------CGUGAGGAG---------------CAAGUCu -5'
3701 5' -53.2 NC_001650.1 + 57695 0.68 0.932679
Target:  5'- aGAGGgGGCCCucgaACUCCUCGUcgCAGu -3'
miRNA:   3'- -CUUUgUCGGGcg--UGAGGAGCAa-GUCu -5'
3701 5' -53.2 NC_001650.1 + 109348 0.68 0.932679
Target:  5'- -cAGCAGCUCGUGCUgCUCGUgccUCAuGAu -3'
miRNA:   3'- cuUUGUCGGGCGUGAgGAGCA---AGU-CU- -5'
3701 5' -53.2 NC_001650.1 + 74766 0.68 0.932679
Target:  5'- uGAGCAGCcucuccaggCCGCAggCCUCGUUCAc- -3'
miRNA:   3'- cUUUGUCG---------GGCGUgaGGAGCAAGUcu -5'
3701 5' -53.2 NC_001650.1 + 159597 0.69 0.921959
Target:  5'- cAAACAGgCCGCACaCCUCGUcCGuGAg -3'
miRNA:   3'- cUUUGUCgGGCGUGaGGAGCAaGU-CU- -5'
3701 5' -53.2 NC_001650.1 + 95514 0.69 0.921959
Target:  5'- -cGGC-GCCCGCACccucucCCUCGUccUCGGAc -3'
miRNA:   3'- cuUUGuCGGGCGUGa-----GGAGCA--AGUCU- -5'
3701 5' -53.2 NC_001650.1 + 161745 0.69 0.90405
Target:  5'- cGGGCGGCgCCGCGCUCC-CGUccaUCAc- -3'
miRNA:   3'- cUUUGUCG-GGCGUGAGGaGCA---AGUcu -5'
3701 5' -53.2 NC_001650.1 + 101026 0.7 0.890909
Target:  5'- uGGACAGCagggCGCGCUCCUUGUUUu-- -3'
miRNA:   3'- cUUUGUCGg---GCGUGAGGAGCAAGucu -5'
3701 5' -53.2 NC_001650.1 + 142285 0.7 0.869464
Target:  5'- aGAGACAaUCCGCGCUCCacUCGaagCAGAu -3'
miRNA:   3'- -CUUUGUcGGGCGUGAGG--AGCaa-GUCU- -5'
3701 5' -53.2 NC_001650.1 + 99534 0.72 0.775476
Target:  5'- uGAGACAGgCCGCucaGCUCgUCGUaCAGGg -3'
miRNA:   3'- -CUUUGUCgGGCG---UGAGgAGCAaGUCU- -5'
3701 5' -53.2 NC_001650.1 + 64361 0.74 0.66576
Target:  5'- ---uCAGCCCGguCUCCcUGUUCAGGg -3'
miRNA:   3'- cuuuGUCGGGCguGAGGaGCAAGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.