Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3703 | 3' | -53.2 | NC_001650.1 | + | 97133 | 1.11 | 0.005178 |
Target: 5'- cCCUGCUAGACACGGUGGUCUUCACCAu -3' miRNA: 3'- -GGACGAUCUGUGCCACCAGAAGUGGU- -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 83852 | 0.89 | 0.120714 |
Target: 5'- gCCUGCUGGACGCGGUGGUCUUU-CUg -3' miRNA: 3'- -GGACGAUCUGUGCCACCAGAAGuGGu -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 120547 | 0.79 | 0.422629 |
Target: 5'- aCCUGCaGGGCGCGGUGGggCUUCugACCu -3' miRNA: 3'- -GGACGaUCUGUGCCACCa-GAAG--UGGu -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 61923 | 0.77 | 0.535978 |
Target: 5'- uUUGUgGGACACgGGUGGUCUaUCGCCAa -3' miRNA: 3'- gGACGaUCUGUG-CCACCAGA-AGUGGU- -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 66741 | 0.74 | 0.708904 |
Target: 5'- aCCaGCUGGugACGGUGGggggcgCUcCGCCGc -3' miRNA: 3'- -GGaCGAUCugUGCCACCa-----GAaGUGGU- -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 36410 | 0.74 | 0.729804 |
Target: 5'- --aGCUGGACACGGUGGcCggggagugcgugggCGCCAa -3' miRNA: 3'- ggaCGAUCUGUGCCACCaGaa------------GUGGU- -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 106962 | 0.73 | 0.738652 |
Target: 5'- gCCUGCaGGAguCGGUGGUCUcgUGCCc -3' miRNA: 3'- -GGACGaUCUguGCCACCAGAa-GUGGu -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 161050 | 0.72 | 0.816676 |
Target: 5'- cCCUGgaGGGCGCGGUGGgccuguaggaggccgUCccgCACCAc -3' miRNA: 3'- -GGACgaUCUGUGCCACC---------------AGaa-GUGGU- -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 73460 | 0.71 | 0.862419 |
Target: 5'- aCCUGCUGaACGCGGg---CUUCGCCu -3' miRNA: 3'- -GGACGAUcUGUGCCaccaGAAGUGGu -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 165963 | 0.69 | 0.921922 |
Target: 5'- gCUGCUuucGGGCccGCGGUGGUCagUC-CCGc -3' miRNA: 3'- gGACGA---UCUG--UGCCACCAGa-AGuGGU- -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 153754 | 0.69 | 0.932047 |
Target: 5'- aCUGCUuggcuuaugGGGCauggcccACGGUGGUCUUCAa-- -3' miRNA: 3'- gGACGA---------UCUG-------UGCCACCAGAAGUggu -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 61600 | 0.69 | 0.932556 |
Target: 5'- uCCaGCUGGACGgGGUGGg--UCGCgAg -3' miRNA: 3'- -GGaCGAUCUGUgCCACCagaAGUGgU- -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 23243 | 0.68 | 0.94405 |
Target: 5'- uCCUGCUGGGgauccugaggcacccCACGGUGGg---CugCAa -3' miRNA: 3'- -GGACGAUCU---------------GUGCCACCagaaGugGU- -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 28971 | 0.68 | 0.945832 |
Target: 5'- cCCUGCUGGGCguACGGgacgcaccugggGGUCaggUACCGc -3' miRNA: 3'- -GGACGAUCUG--UGCCa-----------CCAGaa-GUGGU- -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 28430 | 0.68 | 0.946709 |
Target: 5'- uCCUGCaUAGACAaGGgGGUCcUCACgGg -3' miRNA: 3'- -GGACG-AUCUGUgCCaCCAGaAGUGgU- -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 170792 | 0.68 | 0.954966 |
Target: 5'- cCCUGCcAGGCAUGG-GGUUcUCAUUg -3' miRNA: 3'- -GGACGaUCUGUGCCaCCAGaAGUGGu -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 4085 | 0.68 | 0.954966 |
Target: 5'- cCCUGCcAGGCAUGG-GGUUcUCAUUg -3' miRNA: 3'- -GGACGaUCUGUGCCaCCAGaAGUGGu -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 19029 | 0.67 | 0.96565 |
Target: 5'- gCUGUagcagcGGCACGGgGGUCUUUACUg -3' miRNA: 3'- gGACGau----CUGUGCCaCCAGAAGUGGu -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 77120 | 0.67 | 0.973884 |
Target: 5'- -aUGUUGGuCugGGUGGUCgcggcggccccgUCGCCc -3' miRNA: 3'- ggACGAUCuGugCCACCAGa-----------AGUGGu -5' |
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3703 | 3' | -53.2 | NC_001650.1 | + | 107791 | 0.66 | 0.976934 |
Target: 5'- aCC--CUGGugGCGGUGGUCauggcgCACUAc -3' miRNA: 3'- -GGacGAUCugUGCCACCAGaa----GUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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