miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3703 5' -55.6 NC_001650.1 + 66376 0.67 0.901043
Target:  5'- cCUGGCCAACgugUGCCuGCcCgcgUGCCu -3'
miRNA:   3'- cGACCGGUUG---ACGGuCGaGaagACGG- -5'
3703 5' -55.6 NC_001650.1 + 28839 0.67 0.900405
Target:  5'- aGCUGGCCAACUacguagaGCagaaCAGC-CggCUGCa -3'
miRNA:   3'- -CGACCGGUUGA-------CG----GUCGaGaaGACGg -5'
3703 5' -55.6 NC_001650.1 + 113351 0.67 0.900405
Target:  5'- aGCUGGCgGGCcccacgauggaguUGCC-GCUCUg--GCCc -3'
miRNA:   3'- -CGACCGgUUG-------------ACGGuCGAGAagaCGG- -5'
3703 5' -55.6 NC_001650.1 + 26114 0.67 0.89912
Target:  5'- --gGGCCAgccccaGCUGCaggggcagguguuuCAGCUCUcgCUGCUg -3'
miRNA:   3'- cgaCCGGU------UGACG--------------GUCGAGAa-GACGG- -5'
3703 5' -55.6 NC_001650.1 + 156952 0.67 0.894552
Target:  5'- --aGGCCGuaGCUcacgGCCAGCUCcgugGCCa -3'
miRNA:   3'- cgaCCGGU--UGA----CGGUCGAGaagaCGG- -5'
3703 5' -55.6 NC_001650.1 + 56703 0.67 0.894552
Target:  5'- cGC-GGCCcGCUGCC-GCUCgagggcGCCa -3'
miRNA:   3'- -CGaCCGGuUGACGGuCGAGaaga--CGG- -5'
3703 5' -55.6 NC_001650.1 + 90151 0.67 0.88783
Target:  5'- uGCUGaGCC---UGCagaGGUUCUUCUGCa -3'
miRNA:   3'- -CGAC-CGGuugACGg--UCGAGAAGACGg -5'
3703 5' -55.6 NC_001650.1 + 99732 0.67 0.88783
Target:  5'- uCUGGuauCCAGCUGCCugcaccAGCUCcugaaaucCUGCCu -3'
miRNA:   3'- cGACC---GGUUGACGG------UCGAGaa------GACGG- -5'
3703 5' -55.6 NC_001650.1 + 88852 0.67 0.885769
Target:  5'- uGCUGGCCGACUuugacgucauguggGCCAaccccgaguccGC-CUggaacugCUGCCu -3'
miRNA:   3'- -CGACCGGUUGA--------------CGGU-----------CGaGAa------GACGG- -5'
3703 5' -55.6 NC_001650.1 + 52579 0.67 0.880882
Target:  5'- cGCaGGCaggCGGCcGCCAGCUCgg--GCCg -3'
miRNA:   3'- -CGaCCG---GUUGaCGGUCGAGaagaCGG- -5'
3703 5' -55.6 NC_001650.1 + 71940 0.67 0.873713
Target:  5'- gGCUGGCCuuugucAACaGCUuccacaugauaaAGUUCaUCUGCCa -3'
miRNA:   3'- -CGACCGG------UUGaCGG------------UCGAGaAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 44629 0.68 0.857958
Target:  5'- uCUGGCCuAGCUuccuaaaccccugGCCuAGCUUUUUUGCUu -3'
miRNA:   3'- cGACCGG-UUGA-------------CGG-UCGAGAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 73406 0.68 0.850927
Target:  5'- gGCUGGgCAGC--CUGGCUCUgaggCUGCUg -3'
miRNA:   3'- -CGACCgGUUGacGGUCGAGAa---GACGG- -5'
3703 5' -55.6 NC_001650.1 + 50868 0.68 0.850927
Target:  5'- uGCUGGCgCAGCgcacGCCccgcuucgAGCggggggCUUCUGCa -3'
miRNA:   3'- -CGACCG-GUUGa---CGG--------UCGa-----GAAGACGg -5'
3703 5' -55.6 NC_001650.1 + 35342 0.68 0.850136
Target:  5'- cGCUGGCCAaucgcaacacugaGCUGCagcuuucGCUUUUgUGUCu -3'
miRNA:   3'- -CGACCGGU-------------UGACGgu-----CGAGAAgACGG- -5'
3703 5' -55.6 NC_001650.1 + 18165 0.69 0.817799
Target:  5'- uGCUGuGUCAACUgGgCAGaggCUUCUGCUg -3'
miRNA:   3'- -CGAC-CGGUUGA-CgGUCga-GAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 137550 0.69 0.80019
Target:  5'- cGCUGGCCcucAGCUGCauaaaCAGCUCgaggaaCUGgCa -3'
miRNA:   3'- -CGACCGG---UUGACG-----GUCGAGaa----GACgG- -5'
3703 5' -55.6 NC_001650.1 + 53426 0.69 0.80019
Target:  5'- gGC-GGUCAGagggggGCgugUAGCUCUUCUGCCu -3'
miRNA:   3'- -CGaCCGGUUga----CG---GUCGAGAAGACGG- -5'
3703 5' -55.6 NC_001650.1 + 132700 0.69 0.80019
Target:  5'- uGCgUGGCCAgugGCUggGCCAGCUCggcgaucUUUGCa -3'
miRNA:   3'- -CG-ACCGGU---UGA--CGGUCGAGa------AGACGg -5'
3703 5' -55.6 NC_001650.1 + 123416 0.69 0.80019
Target:  5'- cGCUGuGCCuGCUGaaCGGCUaCUaCUGCCu -3'
miRNA:   3'- -CGAC-CGGuUGACg-GUCGA-GAaGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.