miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
371 3' -55.8 AC_000011.1 + 7117 0.66 0.578931
Target:  5'- -gGGGAGGGCGUAGgccUGGgCGGCCuuGCGc -3'
miRNA:   3'- gaUCCUCUUGUGUU---ACCgGCCGG--CGC- -5'
371 3' -55.8 AC_000011.1 + 8842 0.66 0.578931
Target:  5'- --cGuGGAGCGC----GCCGGCCGCGg -3'
miRNA:   3'- gauCcUCUUGUGuuacCGGCCGGCGC- -5'
371 3' -55.8 AC_000011.1 + 21272 0.66 0.556617
Target:  5'- -gGGGGcGAGCAC--UGGCUGGCCu-- -3'
miRNA:   3'- gaUCCU-CUUGUGuuACCGGCCGGcgc -5'
371 3' -55.8 AC_000011.1 + 5221 0.67 0.512816
Target:  5'- -aAGGGGuGCGCGccgGGCUGGgCGCu -3'
miRNA:   3'- gaUCCUCuUGUGUua-CCGGCCgGCGc -5'
371 3' -55.8 AC_000011.1 + 23520 0.67 0.512816
Target:  5'- --cGGAGGugGCGG-GGCUGgGCgGCGg -3'
miRNA:   3'- gauCCUCUugUGUUaCCGGC-CGgCGC- -5'
371 3' -55.8 AC_000011.1 + 16946 0.67 0.502081
Target:  5'- gUAGuuGGGCAuCAGcaGGCUGGCCGCGc -3'
miRNA:   3'- gAUCcuCUUGU-GUUa-CCGGCCGGCGC- -5'
371 3' -55.8 AC_000011.1 + 20272 0.67 0.502081
Target:  5'- --uGGAGAuggGCACGuugGUGGCguUGGCCGgGa -3'
miRNA:   3'- gauCCUCU---UGUGU---UACCG--GCCGGCgC- -5'
371 3' -55.8 AC_000011.1 + 10938 0.68 0.460194
Target:  5'- gCUGGGgcgGGGGCAgAAgcGCCGGCUGUGg -3'
miRNA:   3'- -GAUCC---UCUUGUgUUacCGGCCGGCGC- -5'
371 3' -55.8 AC_000011.1 + 3663 0.68 0.419261
Target:  5'- -cAGGGuugaagaguucgcGGGCuGCAcgGGCCGGCCGUc -3'
miRNA:   3'- gaUCCU-------------CUUG-UGUuaCCGGCCGGCGc -5'
371 3' -55.8 AC_000011.1 + 16009 0.68 0.407704
Target:  5'- -cGGGcGGGACaugcugGCGAUGGCCgcugccgccgccguGGCCGCGc -3'
miRNA:   3'- gaUCC-UCUUG------UGUUACCGG--------------CCGGCGC- -5'
371 3' -55.8 AC_000011.1 + 10973 0.71 0.298334
Target:  5'- cCUuGGAGAGgGCGAggGGCUGGCgCGCc -3'
miRNA:   3'- -GAuCCUCUUgUGUUa-CCGGCCG-GCGc -5'
371 3' -55.8 AC_000011.1 + 23397 1.1 0.000445
Target:  5'- cCUAGGAGAACACAAUGGCCGGCCGCGg -3'
miRNA:   3'- -GAUCCUCUUGUGUUACCGGCCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.