miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
371 5' -67 AC_000011.1 + 6723 0.66 0.142052
Target:  5'- cGCGCCagcauccGCgGGGGGCGCugcuaCCCCa-- -3'
miRNA:   3'- uCGCGG-------CGgCCCUCGCGug---GGGGcuu -5'
371 5' -67 AC_000011.1 + 34731 0.66 0.135007
Target:  5'- -cCGCCGCCGGcGAucgguGUGCAgCgCCCGGAc -3'
miRNA:   3'- ucGCGGCGGCC-CU-----CGCGUgG-GGGCUU- -5'
371 5' -67 AC_000011.1 + 15982 0.66 0.135007
Target:  5'- uGcCGCCGCCGuGGccGCGCGUCUCCGGGu -3'
miRNA:   3'- uC-GCGGCGGC-CCu-CGCGUGGGGGCUU- -5'
371 5' -67 AC_000011.1 + 5224 0.67 0.12794
Target:  5'- gGGUGCgCGCCGGGcuGgGCGCUUgCGAGg -3'
miRNA:   3'- -UCGCG-GCGGCCCu-CgCGUGGGgGCUU- -5'
371 5' -67 AC_000011.1 + 8851 0.67 0.117979
Target:  5'- cGCgGCCaCCGuGGAGCGCGCCggCCgCGGAg -3'
miRNA:   3'- uCG-CGGcGGC-CCUCGCGUGG--GG-GCUU- -5'
371 5' -67 AC_000011.1 + 4603 0.67 0.114823
Target:  5'- gGGUGCCGgaCUGGGGGacaaagGUACCCUCGAu -3'
miRNA:   3'- -UCGCGGC--GGCCCUCg-----CGUGGGGGCUu -5'
371 5' -67 AC_000011.1 + 15647 0.68 0.10297
Target:  5'- gGGCGCC-CCaGGGAGCGCggaaguGCCCgCGc- -3'
miRNA:   3'- -UCGCGGcGG-CCCUCGCG------UGGGgGCuu -5'
371 5' -67 AC_000011.1 + 13609 0.68 0.099372
Target:  5'- gGGCGUCGCaGGGGGCcacgagccggggcaGCGCCgCCCGu- -3'
miRNA:   3'- -UCGCGGCGgCCCUCG--------------CGUGG-GGGCuu -5'
371 5' -67 AC_000011.1 + 5340 0.68 0.097484
Target:  5'- gGGCGCCGaUCGGGAGCGguuuucgACCagCCGGAu -3'
miRNA:   3'- -UCGCGGC-GGCCCUCGCg------UGGg-GGCUU- -5'
371 5' -67 AC_000011.1 + 17059 0.68 0.094846
Target:  5'- gAGUGuaCCGCCGcGGccGCGCACCUCUGAc -3'
miRNA:   3'- -UCGC--GGCGGC-CCu-CGCGUGGGGGCUu -5'
371 5' -67 AC_000011.1 + 15762 0.69 0.082641
Target:  5'- cGCGCCaagaGCCGGcGgcGGCGCAUCgCCCGGc -3'
miRNA:   3'- uCGCGG----CGGCC-C--UCGCGUGG-GGGCUu -5'
371 5' -67 AC_000011.1 + 11005 0.69 0.078191
Target:  5'- gGGCGUCGUCGccGGAGCgGCACCCgCGc- -3'
miRNA:   3'- -UCGCGGCGGC--CCUCG-CGUGGGgGCuu -5'
371 5' -67 AC_000011.1 + 5283 0.7 0.06997
Target:  5'- aAGCGCCcaGCCcGGcGCGCACCCCUu-- -3'
miRNA:   3'- -UCGCGG--CGGcCCuCGCGUGGGGGcuu -5'
371 5' -67 AC_000011.1 + 23280 0.7 0.068048
Target:  5'- gAGCcccuuCCGCguuCGGGGGUGCGCUCCCGGc -3'
miRNA:   3'- -UCGc----GGCG---GCCCUCGCGUGGGGGCUu -5'
371 5' -67 AC_000011.1 + 13079 0.7 0.066177
Target:  5'- cGCGgCGCUGGGGGUG-GCCCCCu-- -3'
miRNA:   3'- uCGCgGCGGCCCUCGCgUGGGGGcuu -5'
371 5' -67 AC_000011.1 + 16321 0.71 0.054405
Target:  5'- cGCGCCGCCGGGGggcgaacucGCGCACaaaCUCCa-- -3'
miRNA:   3'- uCGCGGCGGCCCU---------CGCGUG---GGGGcuu -5'
371 5' -67 AC_000011.1 + 13692 0.72 0.043433
Target:  5'- cGGCGUUuaCGGGcGGCGCugCCCCGGc -3'
miRNA:   3'- -UCGCGGcgGCCC-UCGCGugGGGGCUu -5'
371 5' -67 AC_000011.1 + 9356 0.73 0.041047
Target:  5'- uGCGCCGCCGGcGA-CGCagGCCCCCu-- -3'
miRNA:   3'- uCGCGGCGGCC-CUcGCG--UGGGGGcuu -5'
371 5' -67 AC_000011.1 + 15837 0.76 0.023254
Target:  5'- cGGUGCCGCCGGGcgauGCGcCGCCgCCGGc -3'
miRNA:   3'- -UCGCGGCGGCCCu---CGC-GUGGgGGCUu -5'
371 5' -67 AC_000011.1 + 23356 1.05 8.4e-05
Target:  5'- gAGCGCCGCCGGGAGCGCACCCCCGAAc -3'
miRNA:   3'- -UCGCGGCGGCCCUCGCGUGGGGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.