miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3710 3' -65.5 NC_001650.1 + 30667 0.71 0.289899
Target:  5'- aCCuGGGGGCGgaCGcgcGCGCCG-CGGGGCg -3'
miRNA:   3'- -GGuCCCCCGCg-GU---CGCGGCgGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 83227 0.72 0.248606
Target:  5'- -aGGGGGGCGgUcGCGCgCGUCGAGAa -3'
miRNA:   3'- ggUCCCCCGCgGuCGCG-GCGGCUCUg -5'
3710 3' -65.5 NC_001650.1 + 57939 0.72 0.256457
Target:  5'- gCC-GGGGGCGgcaCCcucagcugggcgggaGGCGCgGCCGGGGCg -3'
miRNA:   3'- -GGuCCCCCGC---GG---------------UCGCGgCGGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 111077 0.71 0.265677
Target:  5'- cCCA-GGGGCuCCAGCGgCGCC-AGGCg -3'
miRNA:   3'- -GGUcCCCCGcGGUCGCgGCGGcUCUG- -5'
3710 3' -65.5 NC_001650.1 + 68679 0.71 0.265677
Target:  5'- gCCAGGGGGCGCCgucucucccccgGcucaaagaGCGCCcccucGCgGAGACc -3'
miRNA:   3'- -GGUCCCCCGCGG------------U--------CGCGG-----CGgCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 90087 0.71 0.265677
Target:  5'- aUCGGGGaaGGCGCCGuGUGCUGgCaCGAGGCg -3'
miRNA:   3'- -GGUCCC--CCGCGGU-CGCGGC-G-GCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 155730 0.71 0.277577
Target:  5'- aCCAGGGcGUG-CAGCGCgGCCaGGGGCu -3'
miRNA:   3'- -GGUCCCcCGCgGUCGCGgCGG-CUCUG- -5'
3710 3' -65.5 NC_001650.1 + 121084 0.71 0.283685
Target:  5'- gCGGGGGGCGCCcguccuGGgGUU-CCGGGACg -3'
miRNA:   3'- gGUCCCCCGCGG------UCgCGGcGGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 75430 0.71 0.283685
Target:  5'- -aGGGGGGCgggcgaggaaGCgAGCGCCGCgagaGGGGCu -3'
miRNA:   3'- ggUCCCCCG----------CGgUCGCGGCGg---CUCUG- -5'
3710 3' -65.5 NC_001650.1 + 158251 0.72 0.237736
Target:  5'- aCCAGGGGGCu--GGCgGCCGUgGAGGCc -3'
miRNA:   3'- -GGUCCCCCGcggUCG-CGGCGgCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 78776 0.73 0.22218
Target:  5'- --cGGGGGCGgCAGCggggacgagaucGCCGCCGcGACc -3'
miRNA:   3'- gguCCCCCGCgGUCG------------CGGCGGCuCUG- -5'
3710 3' -65.5 NC_001650.1 + 93935 0.74 0.193664
Target:  5'- aCCAGGGuGGCGCgA---CCGCCGAGGCc -3'
miRNA:   3'- -GGUCCC-CCGCGgUcgcGGCGGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 142712 0.78 0.094559
Target:  5'- gCGGcGGcGGCGgCGGCGCgGCCGAGACc -3'
miRNA:   3'- gGUC-CC-CCGCgGUCGCGgCGGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 21778 0.78 0.096904
Target:  5'- cCCugguGGGGGaCGCCggggagGGCGCCgGCCGAGGCc -3'
miRNA:   3'- -GGu---CCCCC-GCGG------UCGCGG-CGGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 136624 0.77 0.120623
Target:  5'- gCCcGGGGGCGUCggGGCGCC-CUGAGGCu -3'
miRNA:   3'- -GGuCCCCCGCGG--UCGCGGcGGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 29384 0.76 0.12357
Target:  5'- uCCAGGGGGCGgCGGUgGCCuUCGAGAUa -3'
miRNA:   3'- -GGUCCCCCGCgGUCG-CGGcGGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 126054 0.75 0.14965
Target:  5'- -aGGGGGGCGCgGcCGCCGaaGAGACg -3'
miRNA:   3'- ggUCCCCCGCGgUcGCGGCggCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 130869 0.74 0.168404
Target:  5'- aCCGGGGGGCuggaCaagAGCGCCcCCGAGACc -3'
miRNA:   3'- -GGUCCCCCGc---Gg--UCGCGGcGGCUCUG- -5'
3710 3' -65.5 NC_001650.1 + 130794 0.74 0.176478
Target:  5'- uCCAGGGaGGCGCUGGaCGCC-CCG-GACc -3'
miRNA:   3'- -GGUCCC-CCGCGGUC-GCGGcGGCuCUG- -5'
3710 3' -65.5 NC_001650.1 + 30417 0.74 0.193664
Target:  5'- gCAGaGGGCGCCcuggaGGCGCuCGgCGAGACg -3'
miRNA:   3'- gGUCcCCCGCGG-----UCGCG-GCgGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.