Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3710 | 5' | -54.9 | NC_001650.1 | + | 41552 | 0.68 | 0.903306 |
Target: 5'- cGCGgcggCGGAgAGGgaggaggagAGGCCGCAGc- -3' miRNA: 3'- -CGCaga-GCCUgUCCa--------UCCGGCGUUuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 76827 | 0.68 | 0.903306 |
Target: 5'- aGCGUCgcgagcgagCGGAUAGGgccGCCGCGcAGc -3' miRNA: 3'- -CGCAGa--------GCCUGUCCaucCGGCGUuUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 53373 | 0.68 | 0.890392 |
Target: 5'- -gGUCUUGGccucgagcaGCAGGgcGGCCGCc--- -3' miRNA: 3'- cgCAGAGCC---------UGUCCauCCGGCGuuuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 56451 | 0.68 | 0.890392 |
Target: 5'- -gGcCUUGGAgGGGUGGGCCGgGc-- -3' miRNA: 3'- cgCaGAGCCUgUCCAUCCGGCgUuuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 69481 | 0.69 | 0.883598 |
Target: 5'- -aGUCUUGGAgGuGGuUGGGCUGCAAu- -3' miRNA: 3'- cgCAGAGCCUgU-CC-AUCCGGCGUUuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 19542 | 0.69 | 0.876586 |
Target: 5'- cGCGagUCGGGgGGGUugAGcGCCGCGGu- -3' miRNA: 3'- -CGCagAGCCUgUCCA--UC-CGGCGUUuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 62254 | 0.69 | 0.876586 |
Target: 5'- -aGUCUCGGGCGGGcAGccccaCCGCuGAGg -3' miRNA: 3'- cgCAGAGCCUGUCCaUCc----GGCGuUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 58379 | 0.69 | 0.876586 |
Target: 5'- aUGgggCUCGGGCAGGcucucggGGGCCGgGGAc -3' miRNA: 3'- cGCa--GAGCCUGUCCa------UCCGGCgUUUc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 136863 | 0.69 | 0.876586 |
Target: 5'- cUGUCuaaaaUCGGugAGGUAGGuCCuGCAGAc -3' miRNA: 3'- cGCAG-----AGCCugUCCAUCC-GG-CGUUUc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 3515 | 0.69 | 0.869359 |
Target: 5'- gGCGgg-CGGGCAGGUGGGgagaUGCAGGu -3' miRNA: 3'- -CGCagaGCCUGUCCAUCCg---GCGUUUc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 170222 | 0.69 | 0.869359 |
Target: 5'- gGCGgg-CGGGCAGGUGGGgagaUGCAGGu -3' miRNA: 3'- -CGCagaGCCUGUCCAUCCg---GCGUUUc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 52907 | 0.69 | 0.861923 |
Target: 5'- uGCGUCUCGGGgAGGaAGaGCaGCAGc- -3' miRNA: 3'- -CGCAGAGCCUgUCCaUC-CGgCGUUuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 52165 | 0.69 | 0.853508 |
Target: 5'- cGCGUCggGGACgguguugGGGUAcucGGCCGCGGc- -3' miRNA: 3'- -CGCAGagCCUG-------UCCAU---CCGGCGUUuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 37031 | 0.69 | 0.846446 |
Target: 5'- -gGUCUCGGACG---AGGCCGUcAGGa -3' miRNA: 3'- cgCAGAGCCUGUccaUCCGGCGuUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 57879 | 0.69 | 0.846446 |
Target: 5'- cGCGUCaccUgGGGguGGUAGGgCGCGGGa -3' miRNA: 3'- -CGCAG---AgCCUguCCAUCCgGCGUUUc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 160455 | 0.7 | 0.820966 |
Target: 5'- aGCGcccccCUCGGGCGGGUcuccgccccccgcGcGCCGCGAGGa -3' miRNA: 3'- -CGCa----GAGCCUGUCCA-------------UcCGGCGUUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 114589 | 0.71 | 0.795661 |
Target: 5'- aGC-UCUCGGACAGGUGacggcaggugcuGGCCacCGAGGa -3' miRNA: 3'- -CGcAGAGCCUGUCCAU------------CCGGc-GUUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 42511 | 0.71 | 0.777486 |
Target: 5'- aGUGUgUUUGGGCAGGUGGGCCa----- -3' miRNA: 3'- -CGCA-GAGCCUGUCCAUCCGGcguuuc -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 118236 | 0.71 | 0.768202 |
Target: 5'- aGCGcucgggguUCUCGGGCAGcuuGGCCGCcAGGa -3' miRNA: 3'- -CGC--------AGAGCCUGUCcauCCGGCGuUUC- -5' |
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3710 | 5' | -54.9 | NC_001650.1 | + | 91128 | 0.71 | 0.768202 |
Target: 5'- gGCG-CUCGGAgacUGGGUccucccGGCCGCGGGGg -3' miRNA: 3'- -CGCaGAGCCU---GUCCAu-----CCGGCGUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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